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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatattttatttcttgttgtggtcttggttttttcattagtgtttcttaacgcgccaagacaatgacagttgtcaatgtgataccttatctttaatat...

Basic information

species Zea mays
transcript GRMZM2G064023_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 13
TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatattttatttcttgttgt-ggtcttggttttt-tcattagtgtttct--taacgcgccaagacaatgacagttgtcaatgtgataccttatctttaatat
|||||||||||| || |||||||||||||||||||| |||||||||||  ||  ||  ||||| |   | ||| ||||| |  |||||||| ||   |  |    ||        | | |  |     | | |   ||| |      
TGATCATGAAGGTGGAAATGTCAGTGCTCATACTGGACATCTGgtaattattgtttctttgttttcaatgttgatttttcttgttagtgttgctaacattgttttaacctgccaccggatcactgctggctgctgcatcatcc----

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 13
TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatattt-tatttcttgttgtggtcttggttttttc--attagtgtttcttaacgcgccaagacaatgacagttgtcaatgtgataccttatctttaatat
|||||||||||| || || ||||||||||||||||| ||||||||||| ||| ||||||| |||    |   | |||||||   ||||  || |       |     |   || || | |   || |  |  ||  |   | ||  
TGATCATGAAGGTGGAAACGTCAGTGCTCATACTGGACATCTGgtaatttttgtatttctggtttcaatgcagtttttttcttgttagcattgccactattgttgtaaacctgccaatggatcatttc-tggctgctacatcat--

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 5'ss of exon 13
TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatattttatttcttgttgtggtcttggttttttcattagtgtttcttaacgcgccaagacaatgacagttgtcaatgtgataccttatctttaatat--
|||||||||||| || ||||| |||||||| |||||||| ||||||    | ||| |  | |    || |   ||||      ||  ||     ||  |  |||    | |  ||| |   ||  | |  || |  || || |  
TGATCATGAAGGTGGAAATGTTAGTGCTCACACTGGTCACCTGgta----tgtatatactctccatgtgtcaattttaa----aggattgacctacctg--aagtttctaatggttcttt-tgctaaaaattcttgttcatgtag

upper sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 14
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 13
TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaa-------tattttatttcttgtt-gtggtcttggttttttca---ttagtgtttcttaacgcgccaagacaatgacagttgtcaatgtgatacc------ttatctttaatat-------------------------------------------------------------------------------
|||||||||||||||||||||||||||||| ||||||||||| ||||       ||  ||  ||||  || ||    | |   | |  |   ||  ||| | |    | |  ||| || |      |    | || ||         ||||   | ||||                                                                               
TGATCATGAAGGCGGGAATGTCAGTGCTCACACTGGTCATCTAgtaagtgagcctagattcgttctaattagttaaatggaaatgtgtaattttgttgtatttccgagggtaaagtcattattttatcctgaagttatttaatggaattatggctcatattttcagtcagtgtgtttgttattatttagtgatcatgaagaggaatgttctctattgactgatattatgctcaattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020672|gb|AW065480.1|AW065480
EST:     TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCGGCTCTAAAT
genomic: TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatatttt ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAAT
EST: gi|31361054|gb|CD445411.1|CD445411
EST:     TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCGGCTCTAAAT
genomic: TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatatttt ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAAT
EST: gi|6952534|gb|AW424602.1|AW424602
EST:     TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCGGCTCTAAAT
genomic: TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatatttt ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAAT
EST: gi|5915419|gb|AW053060.1|AW053060
EST:     TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTG                         GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCGGCTCTAAAT
genomic: TGATCATGAAGGCGGGAATGTCAGTGCTCATACTGGTCATCTGgtaatatttt ... ccacatgcagGTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAAT