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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGGAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcagtttgatatactatttctgatctggtattaaatttctgccttgcttccttttacttgcagattttgaaaagaggcttatataaattctcac...

Basic information

species Zea mays
transcript GRMZM2G063851_T04
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 14
GTTGGGAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgt--tcagtttgatatactatttctgatctggtattaaatttctgccttgcttccttttact----tgcagattttgaaaag-aggcttatataaattctcac------------------------------------
||||| ||||||||||||||||||||||||||||| ||||| || || |||||  ||||||| ||| |||| ||||| || |||||||| | |  |||||||| |  |||   |||  | ||        |         |  || ||   ||      || ||  || | |  |   ||| ||  ||| | |                                     
GTTGGAAGTGCTCTGTCAGATCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCATTGCACGGCCTGGCTAATCAGgtatatgctcagtttgttgcactggatcttgtttgccgcatcctgctaaaaaggactcattgcgctattcaacatatgctgcagatcatttttaaatcgatttttagtttgtgtgaactgaccatagtcaacatgtaatgcag

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 14
GTTGGGAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcagtttgatatactatttctgatctggtat-------taaa-------tttctgccttgcttccttttac----ttgcagat----tttgaaaagaggcttatataaattctcac-------------------------------------------------------------
||||| |||||||||||||| |||||||||||||| ||||| || || |||||  ||||||| ||  |||| ||||| || |||||||| || |||||||| | ||||   |||  ||||  |        ||||       |  |||| |||| | ||   |     | ||||||    |||| ||  |||   |||    | ||  |                                                             
GTTGGAAGTGCTCTGTCAGACCCTTATCTTTCTTTTGCAGCTGCACTGAATGGTTTAGCTGGACCGTTGCACGGCCTGGCTAATCAGgtatgctcagtttgttgtactggatcttctctgccacatcctgctaaacaaggattcactgcattgcatactcaaaatatgtcgcagattatctttggaagaaggaacataatgttccttccatttttaaattgatattttagtgtgtgtgtgtgaactaaccatagttcacatccaatgcag

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA15G42300.2 (Glycine max), 5'ss of exon 14
GTTGGGAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgt-gtgttcagtttgatatactatttctgat--ctggtatta-aatttctgccttgcttccttttacttgcagattttgaaaagaggcttatataaattctcac
||||  ||| | || ||||||||||||||| | || ||||| ||| | |||||| |||||||||| ||||||||  | || ||||||||  | |    ||| || |  ||| || | |  ||| | ||    | |   | |||||    ||    |   | ||| ||||  | | ||   || | |     
GTTGCTAGTCCGCTATCAGATCCTTATCTTGCATTTGCAGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTTTGGCCAATCAGgttatttgttattttattttttatatccgttttctgtttttctggtattaactttgctatagttcgtcttttggtttagaaatcatgtttggctataatg----

upper sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA08G16770.1 (Glycine max), 5'ss of exon 14
GTTGGGAGTGCTCTGTCAGATCCTTATCTTTCTTTCGCAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcagtttgatatactatttctgatctggtattaaatttctgccttgcttcctttta-cttgc-agattttgaaaagaggcttatataa-attctcac
||||  ||  | || ||||||||||||||| | || || || ||| | |||||| |||||||||| |||||||| || || |||||||| | ||  |||  || |  | ||||   | |  | | |  ||||||  |  |||   || |  |||| | | ||        || | | | |  ||  |   
GTTGCTAGCCCGCTATCAGATCCTTATCTTGCATTTGCGGCTGCTTTGAATGGGTTAGCTGGGCCCCTGCATGGTCTGGCCAATCAGgt-tattttgtt--atttggtttttccttttttttttcagttttctgtttctcttgtattaaatttgctatagttcatctttcggttgagaaatcatgtttgg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116813560|gb|EC856011.1|EC856011
EST:     CAGCGGC-CTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|78179069|gb|DV549442.1|DV549442
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|31364242|gb|CD448597.1|CD448597
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|76010584|gb|DT937754.1|DT937754
EST:     CATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|6964715|gb|AW433408.1|AW433408
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|76010585|gb|DT937755.1|DT937755
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|7145414|gb|AW506895.1|AW506895
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGAGAGTGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: gi|67040702|gb|CO466957.1|CO466957
EST:     CAGCGGCTCTTAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAA-TCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTG
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTG
EST: gi|116825307|gb|EC869024.1|EC869024
EST:     CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG                         GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGCGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT