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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatactaacatacgtgctattatgcattttctcattactcaaccatcgaacttgttttgatggaccattttaattgcttactcag

Basic information

species Zea mays
transcript GRMZM2G059671_T04
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g32610.2 (Oryza sativa), 5'ss of exon 15
GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatactaacatacgtgctattatgcattttctcattactcaaccatcgaacttgttttgatggaccattttaattgcttactcag
|| || ||||| |||||||| || || | ||||||||| || ||||| ||||||||||| |||||||||||| |||| || |||||||||   | || |     ||| |||| || ||| |||  | ||||||  |||     | | || ||| ||||||| |  |||||| ||   |   |||
GTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAAgtat--ctataatatac-tgttat-atgtttcttctcacaacttg--tagccaagttggtttgatgaat-attttatttttatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770366|gb|BQ035087.1|BQ035087
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|19822326|gb|BQ048350.1|BQ048350
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|76284240|gb|DV023808.1|DV023808
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|26456039|gb|CA827622.1|CA827622
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|67042437|gb|CO468692.1|CO468692
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGTCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|149096725|gb|EE182499.2|EE182499
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|113703759|gb|EE681263.1|EE681263
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGTCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|88757722|gb|DY541863.1|DY541863
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|20336958|gb|BQ172588.1|BQ172588
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|78110653|gb|DV529058.1|DV529058
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|60358265|gb|DN225238.1|DN225238
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|60357002|gb|DN223975.1|DN223975
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|60337361|gb|DN204334.1|DN204334
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|148945985|gb|EC891279.2|EC891279
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|211160526|gb|FL223272.1|FL223272
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|19770367|gb|BQ035088.1|BQ035088
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|78544160|gb|DV621658.1|DV621658
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: gi|78544345|gb|DV621843.1|DV621843
EST:     AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG                         GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT