Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|||||||||||||||||  | |||||||||||||||||||| || |||||||| || ||||| ||||| ||||||||||||||||||||||| |||  |||     ||| | ||| | |    |     |||| ||| |   ||  || | |   | |     || ||||| | |    | | || |||    ||  ||    |                       
GGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAGgtatccttttaatt-----catttcaatgcatagtcg-----gtatgtaatacctttgctttttt---accatgaaattcagttgtgtcttgccttaccatgcccattttttaacag-----------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| || ||||||||   || | || | | |     |||    || |    | ||||| ||| |||   ||| ||  |       |  ||| || || |||||        |||| |||   |||| ||  | ||||                
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttgtctactgtga----ttaagccattatggagattagta-atataata--ttgctgctt-------catcat-cattttttttat------gtatgaaat---gtttctttatgtggc----------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|||||||| || |||||  |||||||| | |||||||| ||||| || ||  | ||||||||||| || ||||||||||| |||||||| |  || | | | ||| | | ||   ||||         |  ||||    ||| ||||| |||   || |    || ||||| |   | | || |  |   | | |  | |                           
GGAGCTGTAAATTTTGCTCTGATGATGGCTCAAATGGAAGGAGGATGCCCCATTGACTACAACACAATAACTGATCTCTTTCTTCAGgt-ttattcgcagt-ttaccctttagtatctt--------catgatatttggttcattgttctcttataatttattattcagttgt---aattttgaaaagacagtatcttgt---------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||||   || | | || | |  |   || || |  |   || ||  |||| | ||| ||| |  |      |   |  ||  ||| ||   |   |||   |  | |||    ||||   ||||| |||| |||| |  |||
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaa-ttatgatgaatatta--atatgatattttttttcat-----gatcattgatttagtactga-atggttcttgaaattattgttattttcattttgg-ttactttctgct-cag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagta-tataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||||| |||||||| ||||||||||||||||| ||||| || |||||||| || |||||||| || ||||||||   || | || | | |     |||    || |    | ||||| ||||| |||| | | |   ||   | | |   || |  | |   |   |||  |||||                                     
GGTGCTGTTAATTTTGCATTAATGATGTCGCAAATGGAGGGAGGTTGCCCAGTTGATTACAACACCATAACTGATCTGTTTCTTCAGgttgtttatctactgtga----ttaagccattatgaagattagtaatataatattcct-gcttcatgatcattattgttg-acatatgaaatgtttctttatgtgg-----------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||  |||||||||| |||||||| ||||| || ||  | ||||||||||| || || |||||||| |||||||| |  |||| | | |   |   ||| ||| | | ||     ||  ||       | |||| |||   || | |  || ||||| |       || |  ||  ||| | |||||                          
GGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAAGGAGGATGCCCCATTGACTACAACACCATAACAGATCTCTTTCTTCAGgt-ttatttgcagtttaccctagtaacttcatatttg-----gttcat-------tgtgttctcttataattatt-attcagttgt----aattttaaaatacaatcttgttttcctt----------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttt-tagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||||   || | | || | |  |   || || |  |   || ||  |||| | ||| ||    || |   ||   |  ||  ||| ||   | ||  |    || ||  ||| | |||| | || | |||| ||| |   |||
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaa-ttttgatgaatatta--atatgatattttt----gtttcataatcattgatttagtactgaatggttcttgaaat-ta--ttgttattttccatttggttac-ttcctgctcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 13
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||  |||||||||| ||||||||||| ||||| || || ||||| ||||| || || |||||||| ||||||||   || | ||||  |   ||     | ||||  ||  || |  |  |   | || |  | ||    |  | || || ||    ||  ||  |  | |||   || |                                
GGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAGGGGGGTTGCCCTGTTGACTATAACACAATAACCGATCTCTTTCTTCAGgt---ttatctatttcttctat-----tgctttaatgatgttgggttcattgtcctcttctatcatttatatttcgatccaccatttaaagaatgaagtatcacatat--------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| ||||| || |||||  |||||||||| ||||||||||| ||||| || || ||||||||||| || ||||||||||| |||||||| | | ||||  ||||        | | ||||  ||  || |  |  |   | || |  | |||   |  | || || ||    ||  ||  |  | |||   ||                                  
GGTGCTGTAAATTTTGCTCTGATGATGTCTCAAATGGAGGGGGGTTGCCCTGTTGACTACAACACAATAACTGATCTCTTTCTTCAGgtttatcttgttctatt------ctattgctttaatgatgttgggttcattttgctctcctatctttaatatttcgatccaccatttaaagattgaagtatcacat----------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttt-tgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatg-taatttggttttttgctttggcttacattcttcaacag
||||| || || |||||||| |||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||||| || |||||||||  |   | |||| |     |||  |    | | |||||     ||     |    |  | | |    | | |  || ||||   | ||   |    | || | |||||  | ||||       | |             
GGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAGgtaggtcaatatattct----gtatgcaccaatatttgtagctcattacttgttctactcctatatacagaat-tgtatacagtagatgtaaattatcatgtgcttatttgtctatttgtgcatattcag------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactct-ccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
||||| || || ||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||       | |    ||| |||||      | |   ||  | | |||   |||  |||||      ||   ||  ||||  | |  | || |      |   || |  |                               
GGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAGgt-------gaacacgtagaatata---ctgtgtacataaaattgtatctcattacttgtttcacaagagagctatcatgt-gctaatgtacttacttttgcatattcag-------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgt-attattagca-tataaattcttttctgtagtagtatataaa---attctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|||||||| || |||||  | |||||||| ||||||||||||||||||||  | || |  || || || ||||||||||| |||||||| | || ||| | |  |  |  ||| ||||   |  | || ||  |||   |   ||  |   || | ||| |||    | || | |  ||  |  |  ||                                           
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtgactgctgcctctattaattgaata-tataatatcataatcactgatcttacattttttggtaaccaatcttgta-tctttccacaccgca-------------------------------------------

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 15
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaatt--ctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag
|| || || || ||||| || |||||||| |||||||| |||||||| ||||| || |||||||| || || ||||| |||||||||||    |   | || ||    | ||  || |    | |||    | |    |     ||  |  | ||| ||     ||| ||||    |   |||  ||| ||                                      
GGGGCAGTTAATTTTGCTTTAATGATGTCTCAAATGGAAGGAGGTTGCCCAGTTGATTACAACACAATAACAGATCTATTCCTTCAGgttgaatgaatgtt-ttcctttttatgttgtcaagtttaggtacaaaagtcaccaatttcatcctttggaaaa----catacagtctaatggatctgaactttga-------------------------------------