Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTCTTATGAACACTAAAGGAGAGATTTTGCTGGAGCAAAGTGGTGTAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgtcatcttattctgtgattcaatataagttatgtactaattttcaaaatgaatttaacaaggtacatctttgtaccagtttgcacacatctg...

Basic information

species Zea mays
transcript GRMZM2G047894_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 14
ATATTTTCTTATGAACACTAAAGGAGAGATTTTGCTGGAGCAAAGTGGTGTAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgtcatcttattctgtgattcaat---ataagttatgtactaattttcaaaatgaatttaacaaggtacatct---ttgtaccagtttgcacacatctg
|||||||||||| ||| | ||||||||||| || ||||||||||| ||  ||||||| ||||||||||| ||||| ||||||||||||||||| || ||||| |||   |  || | |||||||| ||||    | || |    |  | |||||  |||  ||  ||| ||  | || ||   ||||   ||     || | |   
ATATTTTCTTATCAACTCCAAAGGAGAGATATTCCTGGAGCAAAGCGGCATAGTTAGATCCAATTGCATAGATTGTCTGGACCGTACAAATGTAACTCAGgtatgtt--ttgtcat-ttctgtgaatcaagttaacaaatatcatgattatttttgaaacaaaggtaataacttccagctatattgtgatagcccttactcct---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31348859|gb|CD433216.1|CD433216
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|32934739|gb|CF039551.1|CF039551
EST:     GTACAAATGTGACACAG                         AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: GTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|40335862|gb|CK369932.1|CK369932
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|71325384|gb|DR799369.1|DR799369
EST:     AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATAGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|71311517|gb|DR792122.1|DR792122
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|5296286|gb|AI783056.1|AI783056
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|5846902|gb|AI999985.1|AI999985
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|32850672|gb|CD990353.1|CD990353
EST:     ACAAATGTGACACAG                         AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: ACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|60343346|gb|DN210319.1|DN210319
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA