1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTATAATTTGCGGCAGTGCAGAACCTGCTTTGAAACACCTTCTGTACGTACAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctcaactgccactccgcatatatttcgtcgcatgtatttgatgattgttgtctgcattaattttacacccgtggatgcagttttatactcctt...
species | Zea mays |
transcript | GRMZM2G043530_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATG GTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTGEST: gi|12973912|gb|BG268716.1|BG268716
genomic: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctc ... ttttttgcagGTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTG
EST: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATG GTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTGEST: gi|78025743|gb|DV494130.1|DV494130
genomic: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctc ... ttttttgcagGTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTG
EST: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATG GTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTGEST: gi|78025887|gb|DV494274.1|DV494274
genomic: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctc ... ttttttgcagGTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTG
EST: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATG GTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTG
genomic: CAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctc ... ttttttgcagGTTTCCTTTGCGAATTCCAAGGTCTAGGAGCTTTCGTGCTCATGTACAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAATTTGCGGCAGTGCAGAACCTGCTTTGAAACACCTTCTGTACGTACAGAGATGCTGTGCCAGGAGTCTCGCTATCTGGTTGCCATCCATTAAATGgtaggctctcaactgccactccgcatatatttcgtcgcatgtatttgatgattgttgtctgcattaattttacacccgtggatgcagttttatactcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactccg