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GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgatttgaccttttcttgtcattgctcaggcttgcatattgatcttccatttcctcactactttcccgttagcagtgcaaaatcctattgtttctc...
species | Zea mays |
transcript | GRMZM2G037923_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTCTTCCTTACEST: gi|78023792|gb|DV492179.1|DV492179
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGT-TCCCTTAC
EST: CATGTCCAAAG GAACTCTTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|32869986|gb|CF009668.1|CF009668
genomic: CATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCEST: gi|21432270|gb|BQ547760.1|BQ547760
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTC
EST: GTCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTTCATTG GAACTCTCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACEST: gi|22473314|gb|BU037794.1|BU037794
genomic: G-CAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTC-CTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTAC
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|33097651|gb|CF057611.1|CF057611
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|33096688|gb|CF056682.1|CF056682
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|22713641|gb|BU197414.1|BU197414
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|22545509|gb|BU097868.1|BU097868
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|24770058|gb|CA405187.1|CA405187
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: GAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|31355521|gb|CD439878.1|CD439878
genomic: GAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|21987385|gb|BQ778913.1|BQ778913
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|87156443|gb|DY401232.1|DY401232
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|78083128|gb|DV511521.1|DV511521
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACAEST: gi|26559413|gb|CA831648.1|CA831648
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|31356845|gb|CD441202.1|CD441202
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACAEST: gi|31350536|gb|CD434893.1|CD434893
genomic: AGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
EST: AATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCCTTTCCAAAG GAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTTCCTTACA
genomic: AATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgattt ... actgctgcagGAACTCCTTACACCCAACAATCATACAAGGTTAGCGAGTCGTTCCCTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGGATAATGGAGCAGTGGGAGAAAAGCTACTACATAACAGCAATTGCTGGATCATCCAACGGGAGCTCATTGGTTGTCATGTCCAAAGgtcttgatttgaccttttcttgtcattgctcaggcttgcatattgatcttccatttcctcactactttcccgttagcagtgcaaaatcctattgtttctc
- - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA