Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACAAGATCAGGCCATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctttctcaaactgcagcacctaaagattacacaatataataagtcatattgattttcaagcctatattgcagacaagtaccaaacataaaaacattcctttccctgctacaacatgggtctgactgagaacaattattctctgtttatgcag

Basic information

species Zea mays
transcript GRMZM2G037342_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037342_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 5'ss of exon 12
TTCACAAGATCAGGCCATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctttctcaaactgcagcacctaaagattacacaatataataagtcatattgattttcaagcctatattgcagacaagtaccaaacataaaaacattcctttccctgctacaacatgggtctgactgagaacaattattctctgtttatgcag
|||||||| |||||||| |||||||  ||||| ||||||||||||||||| || |||||||  ||||||||||||||||| || ||||||||| ||||||||          ||| |  || |  |  ||||  || | | | ||   | |   | | |    |  |   |  | |    ||  |||||          ||||  ||| ||||| | | | ||  | |  | ||||    |||
TTCACAAGGTCAGGCCACACTCAACTCCCTAGTAATGCTATCATGATCACTAGTACAATCACTGTTGTTCTTTTCAGCACGATGgtaagttctctctcaaac----------aaacacaaccctgtgcaatacatcct-tcggttcaaagggagacagt----atgaaagctgatccctgaacaattcc----------acaagttggttctga-taaaatcatctctcttatgttccctcag

upper sequence: GRMZM2G037342_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
TTCACAAGATCAGGCCATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctttctcaaactgcagcacctaaaga--ttacacaatata-ataagtcatattgattttcaagcctatattgcagacaa-gtaccaaacataaaaacattcctttccctgctacaacatgggtctgactgagaacaattattctctgtttatgcag
||||| |  || || || |||  ||  |  |||||||| ||||||||||||||||| ||||  ||||| |||||||||||| | ||||| | ||| |     || ||   || |     |||  || | |  ||  ||    ||| | ||  ||  ||| |||        | | ||   |||   |                                                            
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgtt---ttgtagtttctgacatccttagccagtgtccattggtttctttgttattagaggttattttgtctttgttgcatcactgatattca------------------------------------------------------------

upper sequence: GRMZM2G037342_T01 (Zea mays), 5'ss of exon 12
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 14
TTCACAAGATCAGGCCATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctttctcaaactgcagcacctaaaga--ttacacaatata-ataagtcatattgattttca-agcctatattgcagacaa-gtaccaaacataaaaacattcctttccctgctacaacatgggtctgactgagaacaattattctctgtttatgcag
||||| |  || || || |||  || |   |||||||| ||||||||||||||||| ||||  ||||| |||||||||||| | ||||| | ||| |     || ||   || |     |||  || | |  ||  ||  | || ||      ||  ||| |||        | | ||   ||||                                                               
TTCACCATGTCGGGGCACACTTCACTAAGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgtt---ttgtagtttctgacatccttagccagtgtccattggttttttttatcagaggaggttattttgtctttgttgcatcactgataatc-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87152007|gb|DY396796.1|DY396796
EST:     ATACTCAACAACCTAGCAATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT        
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagG
EST: gi|19058280|gb|BM736947.1|BM736947
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|71759365|gb|DR957302.1|DR957302
EST:     TTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: TTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|76912609|gb|DV164817.1|DV164817
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|110481107|gb|EE010953.1|EE010953
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|50328970|gb|CO524096.1|CO524096
EST:     TCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: TCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|76931825|gb|DV172864.1|DV172864
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|76921050|gb|DV168432.1|DV168432
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|71426857|gb|DR807907.1|DR807907
EST:     TCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: TCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|38568958|gb|CF974843.1|CF974843
EST:     ATGCTATCATGATCACAAGCACAATCAGTGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|211218746|gb|FL457360.1|FL457360
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|20300776|gb|BQ163719.1|BQ163719
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|18964390|gb|BM660978.1|BM660978
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|7216796|gb|AW562918.1|AW562918
EST:     ATGCTATCATGATCACAAGCACAATCAGTGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCCCTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|149058821|gb|EE156842.2|EE156842
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
EST: gi|78119305|gb|DV537689.1|DV537689
EST:     ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATT                         GTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG
genomic: ATGCTATCATGATCACAAGCACAATCAGCGTTGTTCTTTTCAGCACAATTgtaagttctt ... gtttatgcagGTCTTTGGGCTGCTGACGAAGCCACTGATCAGGCTCTTGATCCCGTCAAGG