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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttttattcctgttcactggacggcaccacctttcatgtcaattaaatcttataaaattttcaatctctcttccatgcacatgagtaccattttgtttgattacattagcaaaacagcactgcactagaagttacatttttttaatatttcttgttatctcattcagtctccattttatcctgatcag

Basic information

species Zea mays
transcript GRMZM2G034143_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 13
CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttttattcctgttcactggacggcaccacctttcatgtcaattaaatcttataaaattttcaatctctcttccatgcacatgagtaccattttg--tttgattacattagcaaaacagcactgcactagaagttacatttttttaatatttcttgttatctcattcagtctccattttatcctgatcag
|| |||||||| ||| ||||||||||||| ||||| |||||||||||  ||||||| |||||| ||||||||||||  ||  |  |||              | |    || ||  |||| | |               ||| | | | |||| ||| ||   |  || || ||  ||||  || |  |   |||   |                                                                      
CTAATCTATCACAATGTACCAAAAGATATAGCAAACAGGCATGTTCTATTGTTGGATCCCATACTGGGAACAGgtttgttgatgcttctcacat--------gtattttctgtc--gtcagtca---------------tcacttttttttcc-tgctcactggagcccttctgcctttgcctatagcatgtaaaagac----------------------------------------------------------------------

upper sequence: GRMZM2G034143_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 13
CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttttattcctgttcactggacggcaccacctttcatgtcaattaaatcttataaaattttcaatctctcttccatgcacatgagtaccattttgtttgattacatta-gcaaaacagcactgcactagaagttacatttttttaatatttcttgttatctcattcagtctccattttatcctgatcag
|| |||||||| |||||||| |||||||||||||| |||||||| ||  ||||||| |||||| |||||||||||   ||  | ||||    ||||        | |     |  ||| |  | ||| || |               ||||     |||  ||| ||   |   |     ||  | | | |||| ||                                                                       
CTAATCTATCACAATTTACCGAAAGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGgtatgttgatgattc----tcac------atatccttcctgttgttacatgaattttgt---------------tcttgtgctcactggagcacttctgcctccacctatctcatgtaaaagaga----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211032140|gb|FL160201.1|FL160201
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|211032141|gb|FL160202.1|FL160202
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|14311434|gb|BG901189.1|BG901189
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|148943393|gb|EC888452.2|EC888452
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|32826219|gb|CD965897.1|CD965897
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|211032143|gb|FL160204.1|FL160204
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|37385350|gb|CF629812.1|CF629812
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|60340284|gb|DN207257.1|DN207257
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|110957674|gb|EE177726.1|EE177726
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|24766852|gb|CA401999.1|CA401999
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|67012645|gb|CO441394.1|CO441394
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|78113248|gb|DV531642.1|DV531642
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
EST: gi|211032142|gb|FL160203.1|FL160203
EST:     AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG                         GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG
genomic: AGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAGgttcattttt ... tcctgatcagGAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAG