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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTGCAAGgtagctgttaaaattgcatgttttttgatatatactactccttgatgcattatttgtttattaaaacatgcctattctgatgtaaaattttgctgtgttt...

Basic information

species Zea mays
transcript GRMZM2G032351_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g23890.1 (Oryza sativa), 5'ss of exon 15
CAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTGCAAGgtagctgttaaaattgcatgttttttgat--------atatactactccttgatgcattatttgtttattaaaacatgcctattctgatgtaaaattttgctgtgttt
|||||||||||||||||||||||||||||||||| ||||||||| | |||||| | || |||| |||||| |||||| ||||||| ||||||| ||||||||| |||||  |||| | ||  | | | |        | |||| |||  ||||   || ||    || | ||||  | ||| ||||    |    | |||  |||   
CAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTCTTTGCAGTGCTTGATAGGCAACCCATGAAAATTTTCAGGGAAGAATGTGCAAGgtacctgttccaatttcctgcatctgggtcagttcgtacataccactatttgaaa-atcatgatgttttcaaaatttaccttttctttcat----tcttgaagtg---

upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 17
CAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTGCAAGgtagctgttaaaattgcatgttttttgatatatactactccttgatgcattatttgtttattaaaacatgcctattctgatgtaaaattttgctgtgttt--------
| |||||||| ||| | || || ||||| | |||||||||||| || |||||| | || || | ||||||||||||  |||||| ||||||||| || ||||| || || |  |  ||| ||| | |       | |||   |   ||  ||||   ||| |  ||  |  | ||  | ||||| |   || |||| |          
CTACACATGTATGTTTGATTACTGACTTCTTTCCTGGAGGAGAGTTGTTTGCATTGCTTGACAAGCAACCAATGAAGATTTTCAAAGAAGAATCAGCGAGgta-ctattgatttcccatttttctcggc-----caactttcttgggccgtatt--attacttgaagttttcaatatttatgtagatgattcctgtctgcaatattgt

upper sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 14
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 15
CAACACATGTTTGTCTCATAACAGACTTTTGTCCTGGAGGAGAATTATTTGCACTACTCGATATGCAACCAATGAAACTTTTCAGAGAAGAATCTGCAAGgtagctgttaaaattgcatgttttttgatatatactactccttgatgcattatttgtttattaaaacatgcctattctgatgtaaaattttgctgtgttt---------
| ||||| |||||| | |||||||||||||  ||||| ||||| |||||||| || || || | |||||| |||||| | || ||||| ||||||||||||||  ||||   ||  ||| |    || | |||   |||| ||   |||||||     || |  ||  |  | |||   ||  ||||||||    | |           
CTACACACGTTTGTTTGATAACAGACTTTTTCCCTGGTGGAGAGTTATTTGCCCTGCTTGACAAGCAACCCATGAAAATATTTAGAGAGGAATCTGCAAGgtacatgttcttataacatttacagtg-tctatgacactcttt---gcattat--aactactggaaattttcgatt---atccaaaattttctcttatagttgctgtaa