1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGGAAATGGCAACCGAACAAAGCGAACTGGATCTATCGTATGGGATGCGGTACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatgttccatcctatcctagtcctagcgctaaatttgtttccagcacattcagttctctgaaacttgctggatgaagcaattcttccccagtcatggtagtatatattcacacccctgactatgttttcacag
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACAATGACGTAAAAATCCCAGAGAGCATACGAGCGTCTCATCTTGGACAC GATAAGAGGAGACCAGCACGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|26456967|gb|CA828550.1|CA828550
genomic: ACAATGGCGTCAAAATCCCAGA-AGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCA-GCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|6031397|gb|AW076299.1|AW076299
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGACGTAAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGACAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|71596396|gb|DR907147.1|DR907147
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|78077421|gb|DV505855.1|DV505855
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|22521339|gb|BU080150.1|BU080150
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|78119963|gb|DV538347.1|DV538347
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTTTCATCTTGGATAC GATAAGAGGAGACCAGCAGCCCTTCGTTCGCCGAGATGAGCTGAGGEST: gi|88750685|gb|DY534826.1|DY534826
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|109179593|gb|EC380097.1|EC380097
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: GGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|51592845|gb|CV071991.1|CV071991
genomic: GGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|47962266|gb|CN844975.1|CN844975
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGTACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|76281884|gb|DV021452.1|DV021452
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|78544145|gb|DV621643.1|DV621643
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|78109019|gb|DV527436.1|DV527436
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGEST: gi|62550472|gb|DN830892.1|DN830892
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
EST: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATAC GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
genomic: TACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatg ... gttttcacagGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAATGGCAACCGAACAAAGCGAACTGGATCTATCGTATGGGATGCGGTACAATGGCGTCAAAATCCCAGAAGCATACGAGCGTCTCATCTTGGATACgtgcgtgatgttccatcctatcctagtcctagcgctaaatttgtttccagcacattcagttctctgaaacttgctggatgaagcaattcttccccagtcatggtagtatatattcacacccctgactatgttttcacag
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