Sequence
atgc intronic sequence ATGC exonic sequenceATTGATGCACATGTTGGTGGTGTAAATGACATAGCATTTGCTCATCCAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttctgtgatggtttagctattggactaatcactttattcagatatgaagctctgaatattgtatattactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G030422_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g14980.2 (Oryza sativa), 5'ss of exon 12
ATTGATGCACATGTTGGTGGTGTAAATGACATAGCATTTGCTCATCCAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttctgtgatggt-ttagctattggact---aatcactttattcagatatgaagctctgaatattgtatattactag-------
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ATTGATGCGCATGTCGGTGGTGTAAATGACATTGCATTTGCCCATCCAAATAAGCAGCTATGTATAATAACCTGCGGAGATGACAAGACAATTAAGgtgagtttctgtgattgcatgagttctgggactgaaagtctctttgtttaacccagaagtgctaagttttatgggc-accatattctag
upper sequence: GRMZM2G030422_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 12
ATTGATGCACATGTTGGTGGTGTAAATGACATAGCATTTGCTCATCCAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttctgtgatggtttagctattggactaatcactttattcagatatgaagctctgaatattgtatattactag
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ATCGATGCTCATGTTGGTGGAGTCAACGACCTTGCATTTTCTCATCCCAACAAGCAACTCTGTGTTATTACTTGTGGAGACGATAAGACCATAAAGgttacctctgctatcgatttttgttatgcattcttatatcggttttcacgtgtag-----------------------
upper sequence: GRMZM2G030422_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 12
ATTGATGCACATGTTGGTGGTGTAAATGACATAGCATTTGCTCATCCAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttctgtgatggtttagctattggactaatcactttattcagatatgaagctctgaatattgtatattactag
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ATCGATGCTCATGTTGGTGGAGTCAACGACCTTGCATTTTCTCATCCCAACAAGCAACTCTGTGTTATTACTTGTGGAGACGATAAGACCATAAAGgttacctctgctatcgatttttgttcggcattcttatatcggttttcacgtgtag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31356149|gb|CD440506.1|CD440506EST: CAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAG GTATGGGAGGCCACTAGTGGAGCTAAGCAATTTACCTTTGAAGGACATGAA
genomic: CAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttct ... atattactagGTATGGGAGGCCACTAGTGGAGCTAAGCAATTTACCTTTGAAGGACATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGATGCACATGTTGGTGGTGTAAATGACATAGCATTTGCTCATCCAAATAAGCAGCTATGTATAATTACATGTGGAGATGATAAGACAATTAAGgtgagtttctgtgatggtttagctattggactaatcactttattcagatatgaagctctgaatattgtatattactag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG