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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATGATGCTCCAGTGACTACCTCGGCCCCTACAACAGCACCTAATGATTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacactaagctattttgctttcttattgatttgcttctgctgcttgttggtttgctcacgcaaagcacgtcatactttatcattatgtttattatt...

Basic information

species Zea mays
transcript GRMZM2G030144_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T03 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 14
TCTGATGATGCTCCAGTGACTACCTCGGCCCCTACAACAGCACCTAATGATTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacactaagctattttgctttcttattgatttgcttctgctgcttgttggtttgctcacgcaaagcacgtcatactttatcattatgtttattatt-
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TCTGACGATGCTCCTGCGACTACTTCCGCCCCTACTACAGCACCTAATGATTTCCTACAGGATCTTTTGGGCATAGGCTTGACTGATACATCTACAGCAGgttttgatctta-cttttttgttcattcagtacatatttggtttgacaagtgaagcaagtgatgctcatattctcacatttgatactcatttatgtcagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91876800|gb|EB406757.1|EB406757
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|71433260|gb|DR814310.1|DR814310
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACTAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|67021834|gb|CO450583.1|CO450583
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|88751809|gb|DY535950.1|DY535950
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|67037313|gb|CO464163.1|CO464163
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG