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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCCGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCAGATGGGTGGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagttttttttttccatggttggcgattgagcactcgtagtgaacttggggaacaacgctgacttatgcttcgcttgctttcgctggtag

Basic information

species Zea mays
transcript GRMZM2G019986_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019986_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52370.2 (Oryza sativa), 5'ss of exon 14
ACCCCCGATAGCGCGAAGCTCATGCTGCTCCGCCTCCACAGCAGATGGGTGGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagttttttttttcc-----atggttggcgattgagcactcgtagtgaacttggggaa-caacgctgacttatgctt---------cgcttgctttcgctggtag
||||| |||||||| ||||| |||||||| || ||||| || |||||||| || || || |||||||||||||| || || || || ||||| ||||||||||  |||| |  |       |   |  |  | |   ||     |   |||  ||  ||   |   |  ||| | ||           | ||| ||| ||| ||||
ACCCCTGATAGCGCAAAGCTGATGCTGCTTCGTCTCCATAGTAGATGGGTAGTTGCTGCTGGTGGCTTCTTGACCCATTCTGTCCCATTGTACATGACAGgtaaattttctcctgtccaatacattcagaaacttgccaagaacaaaaaacaaggaaaaatgatattttcttttactaatattgtcatgattgattttgcttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149111355|gb|EE294858.2|EE294858
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|78089271|gb|DV517645.1|DV517645
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|16925748|gb|BM078816.1|BM078816
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|211210620|gb|FL436849.1|FL436849
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCTTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|110497708|gb|EE015394.1|EE015394
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|211406613|gb|FL094209.1|FL094209
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|16919474|gb|BM074209.1|BM074209
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|5124174|gb|AI745798.1|AI745798
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|211288805|gb|FL433953.1|FL433953
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|211442520|gb|FL447109.1|FL447109
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|61118750|gb|DN559711.1|DN559711
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18169117|gb|BM338957.1|BM338957
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|16379775|gb|BI993142.1|BI993142
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|71430550|gb|DR811600.1|DR811600
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|71774723|gb|DR972601.1|DR972601
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18649167|gb|BM497986.1|BM497986
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18172348|gb|BM347736.1|BM347736
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|148935255|gb|EC879292.2|EC879292
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|149102321|gb|EE287688.2|EE287688
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18166601|gb|BM336440.1|BM336440
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|37387607|gb|CF631001.1|CF631001
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|110214878|gb|EC896775.1|EC896775
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTGGAAGTTTCCCCGCTTTCCTCTTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|10450879|gb|BE924803.1|BE924803
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|40335845|gb|CK369915.1|CK369915
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18164359|gb|BM334198.1|BM334198
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|67018099|gb|CO446848.1|CO446848
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|37375243|gb|CF624047.1|CF624047
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18166599|gb|BM336438.1|BM336438
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|6022083|gb|AW067011.1|AW067011
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|18167755|gb|BM337595.1|BM337595
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|17931736|gb|BM268696.1|BM268696
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
EST: gi|40303710|gb|CK348097.1|CK348097
EST:     GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAG                         GCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA
genomic: GGTCGCCGCCGGTGGCTTCTTGACGCACTCCGTGCCCTTGTATATGACAGgtagtttttt ... tcgctggtagGCGTCGAAGTTTCCCCGCTTTCCTCCTACGCCGGAGAGAACCTGGAAGCGA