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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtttgtttctgccctcattttgtaatgatagaagtgtgcgattgccttgccttgttgtcaaactttatttcttgggattatatttttaagatc...

Basic information

species Zea mays
transcript GRMZM2G017086_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017086_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os01g36930.1 (Oryza sativa), 5'ss of exon 15
GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtttgtttctgccctcattttgtaa------tgatagaagtgtgcgattgccttgccttgttgtcaaactttatttcttgggattatatt-----tttaagatc---------------------------------------------------------------------------------------
|| ||||| || |  ||||||||||||||||| ||||| |||||||||||||||| ||| | |||||  || |||| |  |      | | | |  ||| |  ||   ||| |   | ||     |||  | | |   ||||| ||     | ||   |                                                                                        
GGTTCATCAAGCAATGCTGGGGAATCATCCAGCATGGATATTGACAAAGgcaagtagttggcttctgttcttatttagagaaatagctcagatacttgtactctttgtttgtcaaatggtggggtttttctgcctcttattatgttagggttctagtgtatctattcaagtagcatgctgcgacccatacttcaatactttcaatctggttagctttatgcttagctgtgttgtgtgtttactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211283634|gb|FL461525.1|FL461525
EST:     GCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|5871756|gb|AW018227.1|AW018227
EST:     GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|13316051|gb|BG410498.1|BG410498
EST:     ATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: ATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|13316052|gb|BG410499.1|BG410499
EST:     GGGATCATCCAGTAGCGCTGGGGAAT-ATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|12968041|gb|BG264988.1|BG264988
EST:     TGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: TGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|16378498|gb|BI992465.1|BI992465
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|32930721|gb|CF035533.1|CF035533
EST:     GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|32866634|gb|CF006316.1|CF006316
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|32932882|gb|CF037694.1|CF037694
EST:     GGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|13177837|gb|BG349020.1|BG349020
EST:     CATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: CATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|12968042|gb|BG264989.1|BG264989
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGGCAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|31910881|gb|CD651645.1|CD651645
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|50332355|gb|CO527481.1|CO527481
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG                         CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTTTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: gi|5919412|gb|AW054509.1|AW054509
EST:     GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGCCATTGCCAAAG                         CTGAGTCTTCTCTACCAAAGAACCAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG