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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACCTTCATCACCTCTGATGCCGTTGTTGTTGACGCCAAGGTGGCTGAGCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgaggttgatggtttacttgttaagaaatgggaatggtggtgttaatttgtgtcggttttctttttcag

Basic information

species Zea mays
transcript GRMZM2G015989_T01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67024753|gb|CO453502.1|CO453502
EST:     CAAGCACCATCATCTCCCTGCAAACCCA-TGGCAATGGGTGGTGGCTCAA                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: CAAGCACCATCATCTCC-TGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|22491347|gb|BU051270.1|BU051270
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGA
EST: gi|32847806|gb|CD987487.1|CD987487
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|60396892|gb|DN229711.1|DN229711
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|32867895|gb|CF007577.1|CF007577
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|211490743|gb|FL282859.1|FL282859
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|4226301|gb|AI396408.1|AI396408
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCAATCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|7238275|gb|AW573542.1|AW573542
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|78081966|gb|DV510378.1|DV510378
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGCCAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|32847822|gb|CD987503.1|CD987503
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGGCAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|33096671|gb|CF056665.1|CF056665
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGTAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|116821908|gb|EC865261.1|EC865261
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTAGGGTTCTAAATTGTTCAACTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|32867923|gb|CF007605.1|CF007605
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|24769817|gb|CA404946.1|CA404946
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|37379284|gb|CF626383.1|CF626383
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|16926381|gb|BM079449.1|BM079449
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTATAAATTGAGTCAGCTGCCCTTCGTTCCATCGCAGCGACAG
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGT-TCAGCTGCCCTTCGTTCCATCGCAGCGACAG
EST: gi|31356086|gb|CD440443.1|CD440443
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|67018533|gb|CO447282.1|CO447282
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|67024700|gb|CO453449.1|CO453449
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|29544666|gb|CB605046.1|CB605046
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|211490744|gb|FL282860.1|FL282860
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|67021281|gb|CO450030.1|CO450030
EST:     CAAGCACCATCATCTTCTGCAAACCCAATGGGCA-TGGGTGGTGGCTCAC                         GTTTTGGGTTCTAA-TTGTTCAACTGGCCTTCGTTCCATCGCAGCGACAGA
genomic: CAAGCACCATCATCTCCTGCAAACCCAATGG-CAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|32935512|gb|CF040324.1|CF040324
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|9952879|gb|BE639462.1|BE639462
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTTTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|8318787|gb|BE025427.1|BE025427
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTTTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|211181594|gb|FL462638.1|FL462638
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|4573038|gb|AI586687.1|AI586687
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|211033566|gb|FL449282.1|FL449282
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|21891546|gb|BQ744759.1|BQ744759
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAN                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|40335213|gb|CK369283.1|CK369283
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|4834970|gb|AI670196.1|AI670196
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|67011543|gb|CO440292.1|CO440292
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAN                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|29945491|gb|CB815666.1|CB815666
EST:     GCAAGCACCATCATGTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|9952880|gb|BE639463.1|BE639463
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|21987876|gb|BQ779404.1|BQ779404
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
EST: gi|37380525|gb|CF627079.1|CF627079
EST:     GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAG                         GTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA
genomic: GCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgagg ... tctttttcagGTTTTGGGTTCTAAATTGTTCAGCTGCCCTTCGTTCCATCGCAGCGACAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACCTTCATCACCTCTGATGCCGTTGTTGTTGACGCCAAGGTGGCTGAGCAAGCACCATCATCTCCTGCAAACCCAATGGCAATGGGTGGTGGCTCAGgtacatgaggttgatggtttacttgttaagaaatgggaatggtggtgttaatttgtgtcggttttctttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG