1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTCCAAACTTGAAGTACTTGATCTAAGTGGCAATGCTTCAGCACTTCCTGAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagttggaacatatgcacagcctctaaactataactattaaaaggaggcttatttctctttctctttctctatctgtgagcag
species | Zea mays |
transcript | GRMZM2G015090_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAATTGCTEST: gi|32930496|gb|CF035308.1|CF035308
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAATTGCTEST: gi|88751761|gb|DY535902.1|DY535902
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACTTAAG ACGAATGAAACTCCATGAATTTCTTAATGGTTTGCTGGGCCTAAAACTGCTEST: gi|211519285|gb|FL432530.1|FL432530
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCTEST: gi|78109030|gb|DV527447.1|DV527447
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCTEST: gi|14204018|gb|BG837695.1|BG837695
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: AGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCTEST: gi|32935775|gb|CF040587.1|CF040587
genomic: AGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAATTGCTEST: gi|37399457|gb|CF637057.1|CF637057
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCTEST: gi|211332986|gb|FL087716.1|FL087716
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAR ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAATTGCTEST: gi|60397260|gb|DN230076.1|DN230076
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
EST: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAG ACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
genomic: GAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagtt ... ctgtgagcagACGAATGAAACTCCATGAATTTCCTAATGGTTTGCTGGGCCTAAAACTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCCAAACTTGAAGTACTTGATCTAAGTGGCAATGCTTCAGCACTTCCTGAACCTTCTGCAGTTTCTGCATTACCACAGCTGCAAGAGCTTTACCTAAGgttggaagttggaacatatgcacagcctctaaactataactattaaaaggaggcttatttctctttctctttctctatctgtgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT