1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCCTGGAAAATCACCAGATACTGCCCAATCTGAATCTATAGAGCTAAGGGAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGATgtatgtatctcaatgctccgtgcgttttcttttccttcttttttcagaacatttagtttcacccggaattcaatcgatttttttggttggtggatactgt...
species | Zea mays |
transcript | GRMZM2G014994_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGCTCTGAT GTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGTEST: gi|32909215|gb|CF014027.1|CF014027
genomic: TGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGATgtatgtatct ... ttatcatcagGTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGT
EST: GAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGAT GTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGTEST: gi|4804542|gb|AI665415.2|AI665415
genomic: GAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGATgtatgtatct ... ttatcatcagGTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGT
EST: GAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGAT GTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGT
genomic: GAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGATgtatgtatct ... ttatcatcagGTTGCCCCGTGAACTTTGAGTTCCAAAACTACACAATCATCACAAGCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCTGGAAAATCACCAGATACTGCCCAATCTGAATCTATAGAGCTAAGGGAATTCTGTCTGTGTTATGCTCCTCTAAGTGCTGAGCCTCCTGATCTGATgtatgtatctcaatgctccgtgcgttttcttttccttcttttttcagaacatttagtttcacccggaattcaatcgatttttttggttggtggatactgt
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