1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTATAATTCACCTGGGCAAGTTTTTGTTGCTTTTGAAAAGCCAGAGCGTGTACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAGgtaaacataatggtgtttcatgtgtataatctataatcttctccctgtatcagacagtaatagtaatatagtttgttttcaaaaactgtagtttgttaag...
species | Zea mays |
transcript | GRMZM2G012501_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAG GTTGACACAACTACGGGGGAAGCTGATGAGGATGGTGTGGAGGATGAATACEST: gi|33093956|gb|CF053950.1|CF053950
genomic: TACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAGgtaaacataa ... attttgtcagGTTGACACAACTACGGGGGAAGCTGATGAGGATGGTGTGGAGGATGAATAC
EST: ACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAG GTTGACACAACTACGGGGGAAGCTGATGAGGATGGTGTGGAGGATGAATACEST: gi|67021265|gb|CO450014.1|CO450014
genomic: ACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAGgtaaacataa ... attttgtcagGTTGACACAACTACGGGGGAAGCTGATGAGGATGGTGTGGAGGATGAATAC
EST: TACCTGTTGTTGGGAAGTTTT-AAATTTGTTGAAGTT-ACAGTTAAAGAA GTTGACACAACTACGGGGGAANCTGATGAGGATGGTGTGGGAG-ATGAATA
genomic: TACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAGgtaaacataa ... attttgtcagGTTGACACAACTACGGGGGAAGCTGATGAGGATGGTGTGG-AGGATGAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATAATTCACCTGGGCAAGTTTTTGTTGCTTTTGAAAAGCCAGAGCGTGTACCTGTTGTTGGGAAGTTTTTAAATTTGTTGAAGTTTACAGTTAAAGAGgtaaacataatggtgtttcatgtgtataatctataatcttctccctgtatcagacagtaatagtaatatagtttgttttcaaaaactgtagtttgttaag
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