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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttttctcaccatgttatgtgtatttatgtatttgagtacatgacatggctactaagctggagttacattccag

Basic information

species Zea mays
transcript GRMZM2G010085_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g05780.1 (Oryza sativa), 5'ss of exon 22
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttttctcaccatgttatgtgta---tttatgtatttgagtacatgacatggctactaagctggagttacattccag
||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| || ||||||||||| |   | ||| ||  |   || |   |||| |    |   |   |  |||    ||  |||| | ||   ||| |||
GAAAAAGCTAGACCGCTATAAGAACCCTTGGTTAGAGTTGAAAATTCAGTATGGCCAGAATAAAGGGAAGTTATACAACGAAGAATGTGATCGTTTTATGgtatgctacac-cacaattgttcctgaacaatttaagcccctttcttttttgcattttaac--agcttgtgtc-tattacag

upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g27040.1 (Oryza sativa), 5'ss of exon 22
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttt-tctcaccatgtta---tgtgtatttatgtatttgagtacatgacatggctactaagctggagttacattccag
||||||| |||||||||| ||||| |||||||||||||||||||| ||||| || || || ||||||||||||||||| |||||||| ||||| ||||||||||| | | ||  ||||| | |   | || |   || | |||    || ||||||| ||| | || ||   | ||||| |||
GAAGAAGTTAGACCGCTATAAGAATCCATGGTTAGAGTTGAAAATCCAGTATGGACAGAACAAAGGGAAGTTCTATAATGAGGAATGCGACCGTTTTATGgtatgctctatcataccatctcactttctgcacacatttgttttcaaacgtgacatgtctaattagttg---tcacatttcag

upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 22
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatg--tttt---tctcaccatgttatgtgtatttatgtatttgagtacatgacatggctactaagctggagttacattccag-----------
 |||||| | |||||||||||||| || ||| |||||||||| || ||||| || ||||| ||||||||||| || || || ||||||||| | || ||||||    ||||   |||  | || || | | | ||| |   | |   | ||| |     |||      |  |   | ||| |             
AAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGgtacaaattttatgtctttcaattttttttttctttctaggtctagctccatcatccttctatcggtttctaaaaaaattgctataaatttacag

upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 22
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatg-tttttctcaccatgttatgtgtatttatgtattt--gagtacatgacatggctactaagctggagttacattccag
 |||||| | |||||||||||||| || ||| |||||||||| || ||||| || ||||| ||||||||||| || ||||| ||||||||| | || ||||||   ||||| |  | | ||   |     | ||   | |  | ||   | | |    | |||   |  | |||||      
AAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAACGAAGAATGTGACAGATTCATGgtacaatttttttttctaggtctagctccatcatccttctatgggtttctaaaaaaattgcta---taaatttacag-----

upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA07G38050.1 (Glycine max), 5'ss of exon 22
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttttctcaccatgttatgtgtatttatgt---atttgagtacatgacatggctactaagctggagttacattccag---------------------------------------------------
||||||| | |||||||||||||| || ||| | || ||||| || || || || ||||| ||||||||||| || || || ||||||||||| || ||||| ||   ||     | | || | | ||||| ||    | || | | | |  | |   |  | || |     |  | ||  |                                                   
GAAGAAGTTGGACCGCTACAAGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGgtgtgaaatttatttccttttgtttttatttttgcccaaatttatttcttttcgttcatgttcagttccttgtttagtctggtgttttccgaacagaattcttgtgttttctgacttcacttaaaacttgcag

upper sequence: GRMZM2G010085_T02 (Zea mays), 5'ss of exon 14
lower sequence: EFJ32950 (Selaginella moellendorffii), 5'ss of exon 20
GAAGAAGCTAGACCGCTACAAGAACCCATGGTTAGAGTTGAAAATTCAGTACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgtttttctcaccatgttatgtgtatttatgtatttgagtacatgacatggctactaagctggagttacattccag
|||||| ||||||   |||  ||| || |||  |||| ||||||| |||||||||||||| ||||| ||| | || |||||||| ||||| || ||||||||| ||     | | || |  | || || |   |     || | |||||      |   |                   
GAAGAAACTAGACAAATACCGGAATCCCTGGCAAGAGCTGAAAATCCAGTACGGCCAAAACAAAGGCAAGCTGTACAACGAGGAGTGTGATCGTTTTATGgtacgt-----taagcacga-aggtatactatcgccaccgatttcatgatgcattttgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057932|gb|BM736599.1|BM736599
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|32943371|gb|CF048190.1|CF048190
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGTTATTAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|18648750|gb|BM497569.1|BM497569
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         C-TTGCATGG-GCACAAAC-TGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|5901273|gb|AW042373.1|AW042373
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|67013537|gb|CO442286.1|CO442286
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|60342830|gb|DN209803.1|DN209803
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAA-CT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|87153391|gb|DY398180.1|DY398180
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|22489820|gb|BU049743.1|BU049743
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|78022398|gb|DV490785.1|DV490785
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|7216553|gb|AW562675.1|AW562675
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|33098069|gb|CF058029.1|CF058029
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|19855114|gb|BQ060166.1|BQ060166
EST:     CGGCCATATATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         C-TTGCATGG-GCACAAAC-TGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: CGGCCA-AAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|18648751|gb|BM497570.1|BM497570
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATG                         CTTTGCATGG-GCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
EST: gi|5915179|gb|AW052820.1|AW052820
EST:     ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGNCCGCTTTATG                         CTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT
genomic: ACGGCCAAAATAAAGGGAAGTTCTATAACGAGGAATGTGACCGCTTTATGgtatgttttt ... tacattccagCTTTGCATGGTGCACAAACTTGGATATGGAAACTGGGATGAACTGAAAGCT