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GTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttattttctcaatctcatggttggaaagcatagtttttcaggttcataagacaccatcttatttgagccattcttttccttatcaataaatttgt...
species | Zea mays |
transcript | EF517601.1_FGT012 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TGCCAGAGATTCTTTGCTAAAAAAGNCCATGGCCAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTACTATGACTACTCTTAGTTCAAEST: gi|18384285|gb|BM417484.1|BM417484
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTACTATGACTACTCTTAGTTCAAEST: gi|19821794|gb|BQ047818.1|BQ047818
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTACTATGACTACTCTTAGTTCAAEST: gi|22819752|gb|BU499842.1|BU499842
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAAEST: gi|17970295|gb|BM277058.1|BM277058
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: CCAGGAGAATCTTTGGCTAAAAAGGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTACTATGACTACTCTTAGTTCAAEST: gi|14191163|gb|BG833393.1|BG833393
genomic: CCA-GAGATTCTTT-GCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: TGCCAGACATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTGCTATGACEST: gi|87152447|gb|DY397236.1|DY397236
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGAC
EST: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAG ATAAATTCAGATCTGATCTCATGAATATTACTATGACTACTCTTAGTTCAAEST: gi|19822007|gb|BQ048031.1|BQ048031
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: AAAAGACCATGGACAACAAAGAAAATACAG ATAAATCCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAAEST: gi|18384286|gb|BM417485.1|BM417485
genomic: AAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
EST: TGCCAGAGATTCTTTGCTAAAAAAGNCCATGGCCACCAAAGAAAATTCAG ATAAATTCAGATCTGATCTCATGAATATTCCTATGACTACTCTTAGTTCAA
genomic: TGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttatt ... tcttctgcagATAAATTCAGATCTGATCTCATGAATATTGCTATGACTACTCTTAGTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACAGAATGGCTCTCGAGTGTGCCAGAGATTCTTTGCTAAAAAAGACCATGGACAACAAAGAAAATACAGgtaagttattttctcaatctcatggttggaaagcatagtttttcaggttcataagacaccatcttatttgagccattcttttccttatcaataaatttgt
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA