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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAGGAGCAGAGGGGCGCTGCGAACGGGATAGCTACGACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcgaagctagcagtgctgcgctgccgccctagctcgactcatgtgctagcaaagcaagagtactcactgagtcactgatgaaaaaacgcctctggtttgtag

Basic information

species Zea mays
transcript GRMZM5G877788_T03
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337159|gb|CO532285.1|CO532285
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|211451241|gb|FL460010.1|FL460010
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATYTT                         GTTYTCGTGGGCACAGAAGCGCCAGCAWGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|6021969|gb|AW066897.1|AW066897
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|211396502|gb|FK986087.1|FK986087
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|76018157|gb|DT945327.1|DT945327
EST:     ACGGCGATGTTTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|78123316|gb|DV541700.1|DV541700
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|74243543|gb|DT651457.1|DT651457
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|149077505|gb|EE166202.2|EE166202
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|74233874|gb|DT641788.1|DT641788
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|94474394|gb|EB703352.1|EB703352
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT                         GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTTCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG