Sequence
atgc intronic sequence ATGC exonic sequenceATTGTTGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgcagttttgatctcataaataaacatgtacagactattagactttgtttagggatgcaagtgatggcaccaatgggtaaaagtgggtcggttggct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G876621_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os04g41470.1 (Oryza sativa), 5'ss of exon 13
ATTGTTGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgcagttttgatctcataaataaacatgtacagactattagactttgtttagggatgcaagtgatggcaccaatgggtaaaagtgggtcggttggct
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ATTGTCGAATGTAGGAGGGTATTGAAGTGGACTTATGCTTATGGTTTTTACCTCCCAGAGCATGAACATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgttcgtagttttgctgtaatac-taaata-gcatacgcaagtatcagttacttatctggtttattcttgttgcttatttatctag---------------
upper sequence: GRMZM5G876621_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv00s0207g00090.t01 (Vitis vinifera), 5'ss of exon 13
ATTGTTGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgcagttttgatctcataaataaacatgtacagactattagactttgtttagggatgcaagtgatggcaccaatgggtaaaagtgggtcggttggct
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ATAGTTGAATGTAGGCGAGTTCTAAAATGGACATATGCCTATGGATATTATTTACCTGAGCATGAACATGCTAAGAGACAGTTCTTTGAGTACTTGCAAGgtatttcatttcccccatctcaaaagtggcccatatttctttttgcttttccttgg---tcaaaccttttagctgcttgttccacag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87155958|gb|DY400747.1|DY400747EST: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAG GTGAGGCAGAATCTGGTTTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
genomic: CCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgcagtt ... gtttatctagGTGAGGCAGAATCTGGTTTGGAGCGGCTACATCAATGTGCAGAGAAAGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGTTGAATGCAGAAGGGTATTGAAGTGGACTTATGCCTATGGATTTTACCTGCCAGAGCATGAGCATGCCAAAAGACAGTTCTTTGAATATCTGCAAGgtttgcagttttgatctcataaataaacatgtacagactattagactttgtttagggatgcaagtgatggcaccaatgggtaaaagtgggtcggttggct
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