Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcatgtcttggttaatgtaacacgctagaacttcgctgactcttgtttttgcctccctattttgtccag

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241555|gb|DT649469.1|DT649469
EST:     TGACATGTTGGTGATTGC-AAAACAAAGATACCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: TGACATGTTGGTGATTGCAAAAAC-AAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: gi|74233513|gb|DT641427.1|DT641427
EST:     GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: gi|60397357|gb|DN230173.1|DN230173
EST:     GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: gi|5668511|gb|AI932026.1|AI932026
EST:     GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: gi|211102153|gb|FL034739.1|FL034739
EST:     GTTGGTGATTGCAAAAACAAGATGCCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAAGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: gi|71419948|gb|DR804950.1|DR804950
EST:     GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG                         CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA