1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CCTGCTCATGAAAAGATTGGAGTTGTCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaaacattatgttttcttccttgctttctttaatttgactatgtgaactatgattttttctaccattttcctaccatcacaattcgaataccaaaaccttgcag
species | Zea mays |
transcript | GRMZM5G846339_T02 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|148950257|gb|EC895809.2|EC895809
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|148945517|gb|EC890762.2|EC890762
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: GATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|211435723|gb|FL461646.1|FL461646
genomic: GATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCT--GGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|211015300|gb|FL437092.1|FL437092
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|12046797|gb|BF728936.1|BF728936
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|211501409|gb|FL138835.1|FL138835
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: TCGATTCGCAGTGGATCGKTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGGTGAGGGCGCEST: gi|149070556|gb|EE158958.2|EE158958
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGGTGAGGGCGC
EST: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGEST: gi|37399165|gb|CF636908.1|CF636908
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: CTCTGGGGAACCAG GGGCAGTCAGAAAACGGAAGGGTGCCATGGGAAGGG
genomic: CTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTCATGAAAAGATTGGAGTTGTCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaaacattatgttttcttccttgctttctttaatttgactatgtgaactatgattttttctaccattttcctaccatcacaattcgaataccaaaaccttgcag
- - - - - - - - - - - - - - - - - AGTGGA