1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGAAACCTTGGTGATACTCGCTAGTGCCTCTGACCTTCTACTTCGTGCTACTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttctttcgttcatcagatctcgtgacaggaggataccttttaacaaaatcgtctgttctgttccattatgttctgttgtcattaaacatagtcagctttatcatttcccgcgcactacaaactcgcatgatatatcatcttttgacttgctgactatcgtttatctggtggatgtatgcag
species | Zea mays |
transcript | GRMZM5G844173_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAG CTTCTCGAAGTAACCGEST: gi|149081338|gb|EE170453.2|EE170453
genomic: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttc ... atgtatgcagCTTCTCGAAGTAACCG
EST: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAG CTTCTCGAAGTAACCGCTCGAGCAGTCCATCTTATTATTGAATGGGGAGATEST: gi|76017243|gb|DT944413.1|DT944413
genomic: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttc ... atgtatgcagCTTCTCGAAGTAACCGCTCGAGCAGTCCATCTTATTATTGAATGGGGAGAT
EST: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAG CTTCTCGAAGTAACCGCTCGAGCAGTCCATCTTATTATTGAATGGGGAGAT
genomic: CTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttc ... atgtatgcagCTTCTCGAAGTAACCGCTCGAGCAGTCCATCTTATTATTGAATGGGGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAACCTTGGTGATACTCGCTAGTGCCTCTGACCTTCTACTTCGTGCTACTGATGGAATACTTGTTGACGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttctttcgttcatcagatctcgtgacaggaggataccttttaacaaaatcgtctgttctgttccattatgttctgttgtcattaaacatagtcagctttatcatttcccgcgcactacaaactcgcatgatatatcatcttttgacttgctgactatcgtttatctggtggatgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC