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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAAATGCATGTCAAAAGATTGCTTTAGCACCAACTCCTAGGAGATTAGTTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAGgtagttgctgtccacaccctagtctttttccatatgctgtctccattgcaaacatttttgatagtttggtttgcaaactaggtcagtaaagcatttggag...

Basic information

species Zea mays
transcript GRMZM2G473976_T01
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082250|gb|DV510662.1|DV510662
EST:     TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAG                         TATGAACCATGGAGAAGCTTGGAGCTATGGATTTTGCACCTTCATGAGGAA
genomic: TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAGgtagttgctg ... aaatatctagTATGAACCATGGAGAAGCTTGGAGCTATGGATTTTGCACCTTCATGAGGAA
EST: gi|86466387|gb|DY232758.1|DY232758
EST:     TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAG                         TATGAACCATGGAGAAGCTTGGAGCTATGGATTTTGCACCTTCATGAGGAA
genomic: TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAGgtagttgctg ... aaatatctagTATGAACCATGGAGAAGCTTGGAGCTATGGATTTTGCACCTTCATGAGGAA
EST: gi|5296149|gb|AI783024.1|AI783024
EST:     TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAG                         TATGAACCATGGAGAA
genomic: TTTTCGAGTGGCAATTAAAGTTGGCACGCAAAATTAGTCCATTCTAGCAGgtagttgctg ... aaatatctagTATGAACCATGGAGAA