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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 13
GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgccta---gggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag
|| || |||||||| || |||||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||| | ||   || ||     | |||      || |||  || |  ||            |  | |||||| ||||| |||   |     | || || ||   |||   |||||||| |||| | |||| ||
GTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGCgtaaggacca--cttcatcgttttccac---tagttgtgtttttttgttt------------aagttgtggtgctactgtctatttgtaatcgttttgggttatctgt---ctcatttgtattatcctgtgtag

upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 13
GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaa---cagtttttatgcacatgcacgcacg----cttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag
|| ||    ||||| || |||||||| || ||||||||||| |||||| | || |  || ||||| || ||||||| ||| || ||||||||||||||     || |  |||   |||| ||  ||     | |||    ||  | | | |  ||   ||  | |    | || |   |||      | |                                       
GTAACTAAGGAATCATTTATTGATGGCGGGTTCTTCAAGACTGGTGATGCTGTTAAAGTGGATGACGATGGATACTACATCATCTTGGGACgtaagtagacctagatcctatatgcatgaaccaacatggtcctattatttttaaatgggttattaactcgtcaccaaattttgccctctatatgtggttg--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113694423|gb|DW847952.1|DW847952
EST:     TACTTCATAATTTTGGGAC                         GCACAAATAGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTA
genomic: TACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAAT-GCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTA