Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag

Basic information

species Zea mays
transcript GRMZM2G460078_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 13
GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgccta---gggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag
|| || |||||||| || |||||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| || |||||| | ||   || ||     | |||      || |||  || |  ||            |  | |||||| ||||| |||   |     | || || ||   |||   |||||||| |||| | |||| ||
GTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGCgtaaggacca--cttcatcgttttccac---tagttgtgtttttttgttt------------aagttgtggtgctactgtctatttgtaatcgttttgggttatctgt---ctcatttgtattatcctgtgtag

upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 13
GTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaa---cagtttttatgcacatgcacgcacg----cttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcag
|| ||    ||||| || |||||||| || ||||||||||| |||||| | || |  || ||||| || ||||||| ||| || ||||||||||||||     || |  |||   |||| ||  ||     | |||    ||  | | | |  ||   ||  | |    | || |   |||      | |                                       
GTAACTAAGGAATCATTTATTGATGGCGGGTTCTTCAAGACTGGTGATGCTGTTAAAGTGGATGACGATGGATACTACATCATCTTGGGACgtaagtagacctagatcctatatgcatgaaccaacatggtcctattatttttaaatgggttattaactcgtcaccaaattttgccctctatatgtggttg--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6601765|gb|AW256206.1|AW256206
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|5847518|gb|AW000597.1|AW000597
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|87153333|gb|DY398122.1|DY398122
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|32867326|gb|CF007008.1|CF007008
EST:     GTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: GTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|113694423|gb|DW847952.1|DW847952
EST:     TACTTCATAATTTTGGGAC                         GCACAAATAGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTA
genomic: TACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAAT-GCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTA
EST: gi|37385309|gb|CF629791.1|CF629791
EST:     AGGTGTTACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|17921701|gb|BM259352.1|BM259352
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|93012881|gb|EB638401.1|EB638401
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|211208064|gb|FL437175.1|FL437175
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|17970088|gb|BM276854.1|BM276854
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTT-ATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: gi|78120378|gb|DV538762.1|DV538762
EST:     AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC                         GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG