1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGGGAGGATACTGGAAACCATATTAAGCCTGAGGTTTTTCATTTTCCAATTCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagtgtttcagttcccattttcttgttgacgtagatgttctgaataatagtagtaaattaatccttggccctgcag
species | Zea mays |
transcript | GRMZM2G453794_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|67031292|gb|CO460041.1|CO460041
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|211408837|gb|FL082347.1|FL082347
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTMTTGGGCTGTGCTTGGTGGCCTTTEST: gi|60397477|gb|DN230293.1|DN230293
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTT
EST: GCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|50322941|gb|CO518067.1|CO518067
genomic: GCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|6578074|gb|AW244211.1|AW244211
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|67015741|gb|CO444490.1|CO444490
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|211408841|gb|FL082351.1|FL082351
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|211406286|gb|FL082346.1|FL082346
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|78120961|gb|DV539345.1|DV539345
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|6194536|gb|AW146640.1|AW146640
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|67040750|gb|CO467005.1|CO467005
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTGEST: gi|26558188|gb|CA830423.1|CA830423
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
EST: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTG GTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
genomic: TCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagt ... ggccctgcagGTGTATTGGATTTCTTGGGCTGTGCTTGGTGGCCTTTTCATCCTCCTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGAGGATACTGGAAACCATATTAAGCCTGAGGTTTTTCATTTTCCAATTCGGAGTTGTTTACCACATGAATGCTAGCGGAGGAAGTACAGCTTTATTGgtatgttagtgtttcagttcccattttcttgttgacgtagatgttctgaataatagtagtaaattaatccttggccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA