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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTTGGGTCTGCTCTTGAAATTGTTTGGTCAACTGAAGGAGAGTATGCTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAGgtttgctctttatgacatgatttgtgagttgttactttcgttctttttatgtagtcaattttcacccctatcaaaatttagaacacttaaacctcgcttt...

Basic information

species Zea mays
transcript GRMZM2G443953_T03
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 13
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCCTTTGGGTCTGCTCTTGAAATTGTTTGGTCAACTGAAGGAGAGTATGCTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAGgtttgctctt-----tatgacatgatttgtgagttgttactttcgt-tctttttatgtagtcaattttcacccctatcaaaatttagaacacttaaacctcgcttt----------------------------
||| ||||||||||  || ||| ||||||||||| |||| || || | ||| |  || |||||| ||||||| |||||||| | ||||||||| || |||||||||| ||     |||| | | | |  |    | ||  |   || |  || || |     |    |  |   |      | |    |||  ||   || ||||                             
ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtttgctattctcattatggccttactcatactattttgttggagtatgattctagggttgaagaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481610|gb|EY254442.1|EY254442
EST:     CTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAG                         GAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGA
genomic: CTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAGgtttgctctt ... gtaatttcagGAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGA