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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTCTTTACCGCTCAGATTTCTTTCCTGGGCTTGGATGGATGTTAACAAAGTCCACTTGGATTGAACTGTCACCAAAGTGGCCTAAAGCatatccttactgttgcctaaataatttttactactacatattctgtttctgcaccttttatcatctctattaagaagaaaaatattaaggtcctatagga...

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 13
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T04 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 5'ss of exon 13
AAGCTCTTTACCGCTCAGATTTCTTTCCTGGGCTTGGATGGATGTTAACAAAGTCCACTTGGATTGAACTGTCACCAAAGTGGCCTAAAGCatatccttactgttgcctaaataatttttactactacatattctgt-ttctgcaccttttatcatctctattaagaagaaaaatattaaggtcctatagga
||||||||||||| || |||||||||||||| ||||||||||||||||||||| | || |||||||| |||||||| |||||||| |||||||||| |||||||||||||  |||||||||      ||||| |  | || | || ||   || || | | ||    |  || |  |||             
AAGCTCTTTACCGGTCGGATTTCTTTCCTGGACTTGGATGGATGTTAACAAAGCCTACATGGATTGAGCTGTCACCTAAGTGGCCCAAAGCatatctttactgttgcctac-taatttttatattagcatatacaatattttccatctaccat-atatttcttccttaacaagactttac------------

upper sequence: GRMZM2G426275_T04 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 13
AAGCTCTTTACCGCTCAGATTTCTTTCCTGGGCTTGGATGGATGTTAACAAAGTCCACTTGGATTGAACTGTCACCAAAGTGGCCTAAAGCatatccttactgttgcctaaataattttta----ctactacatattctgtttctgcaccttttatcatctctattaagaagaaaaatattaaggtcctatagga
| |  ||||| ||||| || |||||||||||  | ||||||||| |  | |  || || |||| ||| || |||||||| |||||||||||||||||||| | || | || ||  || ||     || | | || |  |  ||  |    ||  |        | |      ||||||||| |  || ||||   
ATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCatatccttaatatttcatacattcttgtttgtgtctgccatatttgtttattgggagtattccaaataagtaactcttggcaaaaatattta--tcatataa--