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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggctgccaaattacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag

Basic information

species Zea mays
transcript GRMZM2G421857_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 13
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggctgccaaattacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatat-attaaatcatatgctgctctttttttttgcag
|||| |  || | || ||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| | || || ||                                  |||   | ||||| | |  |||| | |||||| | |  ||||| || |||      || || |||| ||
TCCAAAACGGGACGGAAGTGTTACAATTGTAGGGGCTGTCTCTCCACCTGGTGGTGATTTTTCAGATCCTGTTACCTCTGCAACCCTTAGTATTGTTCAGgtaaggaagcagctaa----------------------------------gtctgtcatgattaataatgtttatcgtttcagtgttgttaaaccacatg------ttcttgtttgtag

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaaga--aggctgccaaattacttcaatatacttcagtcctctgatcattagtccagcctga--tttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag
 || ||  | |  || ||||| ||||||||||| ||||| || || ||||| || ||||| ||||||||||| || || ||||||||||| || |||||||||| |  |  ||  |||||    | || ||   | |     |||   | ||   |||||| |  ||  |     |  ||    |||  | ||||| |                        
CCCTGAACGTACAGGTAGTGTAACAATTGTTGGTGCTGTTTCGCCACCTGGAGGAGATTTCTCAGACCCTGTGACATCTGCAACCCTCAGCATAGTTCAGgtaaaactattctttcaaatatggttaaaatgggt-aactgcctgcaaagtaagtcagcctaaggttgtcttgactaattcccgcaaattgttaaaaccct---------------------

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT1G78900.2 (Arabidopsis thaliana), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggctgccaaa--ttacttcaatatacttca------gtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatata---------ttaaatcatatgct---gctctttttttttgcag-------------------------------------------------
 |||||  | || || ||||| ||||||||||| || || || |||||||| || || |||||||| ||||| || || |||||||| |||||||| ||||| |  |    |   |    | ||||  |||  | ||       |    |  || |   |   |  |||  |  | |   || |||||   | ||            | || |||  |   ||  ||||||| | ||                                                  
ACCAGAACGTAACGGAAGTGTTACAATTGTTGGTGCAGTTTCGCCTCCTGGAGGAGACTTTTCAGATCCTGTGACTTCAGCAACCCTTAGTATTGTGCAGgtgattatttggttcatgtctgcttccctatcttccattgtagattacatagtcgtatatgttggttgagatgaaccagatggtgtttagttttagatctgccgcagactcgtatatttaagcattttttttctccactttgaaatgcttactcttccattctggttgtttctcttttcttctgcag

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggctgccaaattacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag
 |||||  | || || ||||||||||||||||| ||||| ||||||||||| || ||||| || || ||||| || || ||||| ||||| ||||| |||||||  |          |        | || |       | |    |||| | | |  |  |    |  | |     ||| ||| ||  |||| |||   |                 
ACCAGAACGTAACGGTAGTGTCACAATTGTTGGGGCTGTGTCTCCTCCTGGAGGAGATTTCTCTGATCCTGTGACATCTGCAACTCTCAGCATTGTCCAGgtaaagataaaattctgtatgcatcttctaatattaaaatgtagctattaatac-gtatattggtgaagggtcaaatttttaatgtagaaaatgatagcat-----------------

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: PP1S10_201V6.1 (Physcomitrella patens), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc-tgccaaattac-ttcaatatacttcagtcctctgatcattagtccagcctgatt---tacagcgtttgttgt----ttcaatatattaaatcatatgctgctctttttttttgcag---------------
 ||  |  | | ||| ||||| || ||||||||||| || || ||||||||||| ||||||||||||||||| ||  | || |||||  |||||||||||||  | |    | ||   |  | | || |  ||  || ||  |     |||     ||||  |     |     ||| | | |    ||  || | ||  |    | |   ||      | ||| |                
CCCGAATCGTACTGGAAGTGTTACCATTGTTGGAGCAGTGTCCCCTCCTGGTGGAGATTTTTCAGACCCTGTCACAGCAGCTACCCTTGGTATTGTTCAGgttggtatttgtacctcctctcatccagtgcaccacattctaccagatattctctaagccaaagcccatgagaagttggctatgatgttgcatgtcttccaagcgaaggaactaaagcatattgtaaatgcatgttgattag

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: PP1S44_102V6.1 (Physcomitrella patens), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc-tgccaaattacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag
 ||  || ||| ||| ||||| || |||||||||||||| || ||||||||||| || || ||||||||||| ||  | || || ||  |||| ||||||||  | |       || | |  |    | | ||  |||    | || ||  |   |  |  | |||     ||  || |      | | |||    ||   | |       ||  |   
CCCGAACCGGACTGGTAGTGTTACCATTGTTGGAGCTGTTTCACCTCCTGGTGGAGACTTCTCAGACCCTGTAACTGCAGCTACTCTTGGTATCGTTCAGgttggtatttacttcagaatgttgtgttcttctctagttaa-taattatatgggaaagc-aagttatctttttaattatacttcaacagtaaggactaaaatacgtggggattcag---

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ33015 (Selaginella moellendorffii), 5'ss of exon 13
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggct---gccaaat-tacttcaatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag
      ||| | ||| |||||  | ||||| || || || |||||||||||||| ||||| ||||||||||||||  | || || || | |||||| |||| |||     |   ||||  | |  |||| | |      |  | ||| |  ||  | |||                                                              
------CAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGGCAGCGACTCTTAATATTGTCCAGGCAAGCgtctttgtgccagttgtttttcagtgttgactgggacactgttgtttgttgcag--------------------------------------------------------------

upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ30330 (Selaginella moellendorffii), 5'ss of exon 14
TCCAGACAGGAATGGCAGTGTCACAATTGTTGGAGCTGTCTCTCCTCCTGGTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggct---gccaaattactt-caatatacttcagtcctctgatcattagtccagcctgatttacagcgtttgttgtttcaatatattaaatcatatgctgctctttttttttgcag
       || | ||| |||||  | ||||| || || || |||||||||||||| ||||| ||||||||||||||  | || || ||  ||||||| |||| |||     |   ||||  ||  || || | |      |  | ||| |  ||  | |||                                                              
------TAGAACTGGAAGTGTTTCTATTGTCGGTGCCGTGTCTCCTCCTGGTGGCGATTTCTCAGACCCTGTTACGACAGCGACTCTTGGTATTGTCCAGGCAAGCgtctttgtgccagttttttttcagtgttgactgggacactgttgtttgttgcag--------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32850183|gb|CD989864.1|CD989864
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32921243|gb|CF026055.1|CF026055
EST:     GTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|67026160|gb|CO454909.1|CO454909
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32845901|gb|CD985582.1|CD985582
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAACATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|6637071|gb|AW261343.1|AW261343
EST:     GTGGTGATTTTTCAGACCCCGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|8368089|gb|BE051034.1|BE051034
EST:     GTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32921648|gb|CF026460.1|CF026460
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|211538183|gb|FL123481.1|FL123481
EST:     GTGGKGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTARATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32846431|gb|CD986112.1|CD986112
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|51592889|gb|CV072035.1|CV072035
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTA
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTA
EST: gi|61118945|gb|DN559906.1|DN559906
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32846734|gb|CD986415.1|CD986415
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|8368090|gb|BE051035.1|BE051035
EST:     GTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|8665370|gb|BE186186.1|BE186186
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCANTTTCTCCAC
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCA-TTTC-CCA-
EST: gi|31356686|gb|CD441043.1|CD441043
EST:     TCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: TCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|19437277|gb|BM953687.1|BM953687
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|22542087|gb|BU092525.1|BU092525
EST:     GGGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|60352649|gb|DN219622.1|DN219622
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32921742|gb|CF026554.1|CF026554
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|40334940|gb|CK369010.1|CK369010
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32920116|gb|CF024928.1|CF024928
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
EST: gi|32921546|gb|CF026358.1|CF026358
EST:     GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAG                         GTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT
genomic: GTGGTGATTTTTCAGACCCTGTTACCTCCGCAACCCTCAGTATTGTTCAGgtaagaaggc ... ttttttgcagGTCTTCTGGGGTTTAGATAAAAAGCTCGCTCAAAGGAAGCATTTCCCATCT