1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATGCAACTATGGAAGAGCTAGCCAAGTTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatatttgctgaagacacttcctgacagataaccataagtagctctagctctgataattttatgtgttgttttctaatgtttgtattctggcttgctttgacag
species | Zea mays |
transcript | GRMZM2G410515_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|16379611|gb|BI993047.1|BI993047
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|113704041|gb|EE681545.1|EE681545
genomic: GTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: TAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|211323425|gb|FL039625.1|FL039625
genomic: TAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCCAACTGTGAGCCTTGCCGGCCTCTCCAA-GEST: gi|4573270|gb|AI586829.1|AI586829
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: CATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|211500354|gb|FL431277.1|FL431277
genomic: CATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|89248324|gb|DY620110.1|DY620110
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTTTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|13558607|gb|BG549963.1|BG549963
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|4573271|gb|AI586830.1|AI586830
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|71765382|gb|DR963319.1|DR963319
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAGEST: gi|31350094|gb|CD434451.1|CD434451
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
EST: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAG ATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
genomic: GATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatat ... gctttgacagATCGGTTTACAAAACTGTCCCAAACTGTGAGCCTTGCCGGCCTCTCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCAACTATGGAAGAGCTAGCCAAGTTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTTAAGTATCATATTGTGAAGACACCGAGgtgaggatatttgctgaagacacttcctgacagataaccataagtagctctagctctgataattttatgtgttgttttctaatgtttgtattctggcttgctttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA