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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCCAATCATAGCTAATGATGAAGATGTTATATCTCTTTTCATGGAACAACATGAGTTATTTCTAAGCTCGACAAAGTCTCGGCTGACAAAATTGCAGgtcagtgcagtgcttgacaatttggttgcattggtcatgtaatgctgctgaagaaaagcaatttttataattccagttctctcctaccaattaatcataa...

Basic information

species Zea mays
transcript GRMZM2G406553_T04
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 13
AACTCCAATCATAGCTAATGATGAAGATGTTATATCTCTTTTCATGGAACAACATGAGTTATTTCTAAGCTCGACAAAGTCTCGGCTGACAAAATTGCAGgtcagtgcagtgcttgacaatttggttgc-attggtcatgtaatgctgctgaagaaaagcaatttttataattc-cagttctctccta-ccaattaatcataa
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AACTCCAACGATAGCAAGTGATGAGGATGTTCTATCTGTTCTAATGGAGCAGCATGAGCTATTTCTAAGCTCAACTCGATCTCGGTTGACAAAATTGCAGgtcagtatggtactttgcattttctttaagatccccccccccccacttct--agtatctttattctcaaacttctcaatggtatttgagttgattaataaga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20508175|gb|BQ279924.1|BQ279924
EST:     AACATGAGTTATTTCTAAGCTCGACAAAGTCTCGGCTGACAAAATTGCAG                         ATCATTCATCAAATGTGGGAAAGAAATGACATCAGGGATGTACTCTCTGCG
genomic: AACATGAGTTATTTCTAAGCTCGACAAAGTCTCGGCTGACAAAATTGCAGgtcagtgcag ... taatatgcagATCATTCATCAAATGTGGGAAAGAAATGACATCAGGGGTGTACTCTCTGCG