1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GTATGACAAAGAAGCTTTCTATTTTGATGAAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggccttcttgtacatttaatattcttttctcagttctcactcatgattagtatatctcttatgctttttctttaaaactgaaaatatcatgtcctt...
species | Zea mays |
transcript | GRMZM2G390374_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAAT CTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCTEST: gi|87152541|gb|DY397330.1|DY397330
genomic: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggcctt ... tttgttgcagCTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
EST: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAAT CTTGTCCAACGTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCTEST: gi|22489723|gb|BU049646.1|BU049646
genomic: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggcctt ... tttgttgcagCTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
EST: GCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAAT CTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCTEST: gi|87152634|gb|DY397423.1|DY397423
genomic: GCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggcctt ... tttgttgcagCTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
EST: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAAT CTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCTEST: gi|87152074|gb|DY396863.1|DY396863
genomic: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggcctt ... tttgttgcagCTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
EST: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAAT CTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
genomic: AAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggcctt ... tttgttgcagCTTGTCCAACCTGCATTCCAGAAAATGTTGACTCATCTGCGCATGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGACAAAGAAGCTTTCTATTTTGATGAAGCTGTTAGGAAAGGAAAACGACAACATTTGGAGTCCAGAATACTGAATgtaaggccttcttgtacatttaatattcttttctcagttctcactcatgattagtatatctcttatgctttttctttaaaactgaaaatatcatgtcctt
- - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG