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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTGgtctgttctcagcccatatacattcagttgactattccgtaacctcatttctgactaatcattttgtcttcttcaccaatgactaatctactatttgtttttgaacataag

Basic information

species Zea mays
transcript GRMZM2G382341_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g48740.1 (Oryza sativa), 5'ss of exon 13
GACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTGgtctgttctca-gcccatatacatt--cagttgactat--tccgtaacctcatttctgactaatcattttgtcttcttcaccaatgactaatctactatttgtttttgaacataag-
|||||||||||||| ||||||  ||| |||||||| ||||||||  ||||||| || |||||||| ||||||||||||||||| || ||||||  ||||||||||  | || | | |  |||   | ||||  ||  |   | ||    | | |   ||  | ||| |    |   | || || || ||  |||||||  |||  |   |    
GACAAGAGCTTATCAAATGGACGGTTTTTCCTTGAACTTCTTAGTGCAGTACAACCGAGGGTTGTCAACTGGAAAGTTGTTACAAAGGGGGAAGATGgtctgttcatatgcacgtttgaattactatttgatgataatttctgactgtttatatatgtatccttttggaaaaccgtagcattggctgattcactatttcctttcaattctgcag

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA14G00820.1 (Glycine max), 5'ss of exon 12
GACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTGgtctgt------tctcagcccatatacattcagt--tgacta---ttccgtaacctcatttctgactaatcattttgtctt---cttcaccaatgac--taatctactatttgtttttgaacataag-----------------------------------------
|| ||||   | ||   |||  | ||||||||||| ||| | ||  | ||  ||||||||||||| |||||||   |||||||||||||||| |||||| |||      | |||  |  |  | |   |||  || |||   ||| |    |   | | | | |   ||||  |  ||    || || | ||||  |||| |  | |   | | | | | || |                                         
GATAAGAATCTTTCTGGTGGCGTTTTCTTCCTTGAGCTTTTGAGTGCTGTGGAGCCAAGGGTTGTCAACTGGAGTCTTGTTACTAAAGGGGAGACTGgtatgtcaactctgtcattctgttgagaaatagtgctggctagaattctgcttgcaactctttaatttcacattaagcattatatttgacaattgacattaatatgatgtgaatatgttatcttatgagcaacaattgaaatggtcaaatttgtcatatgaattgcag

upper sequence: GRMZM2G382341_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv12s0059g00560.t01 (Vitis vinifera), 5'ss of exon 12
GACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTGgtctgttctcagcccatatacattcagttgactattccgtaacctcatttctgactaatcattttgtcttcttcaccaatgactaatctactatttgtttttgaacataag
||||||| | | |||||||| || ||||||||||| ||||||||  | ||  ||||||||||||| ||||||||  || |||| || || |||| ||||  ||  | |    | | |     | ||   | || | ||         ||||  ||| ||||  | ||   ||   || |   |  |     |  |||           
GACAAGAACCTTTCGAATGGGATTTTCTTCCTTGAGCTTCTTAGTGCTGTGGAGCCAAGGGTTGTCAACTGGAACCTTATTACAAAGGGTGAAAGTGgtacgtcattatagaaaacaaggaaattttgat-tttcatagttcttgagctga--aataatttatttttgggcatagattatggacattaagatcatttcat--------