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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAGGTGACTTGGCTACTCTTGCCGACAAGAGTATCTTTCCTGGGGATGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagcaaatatgatgtgccaaataatttgtgaaagacaaatgatgttgttgatggttctaattgtttttcgtttgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G376074_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376074_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g09270.1 (Oryza sativa), 5'ss of exon 4
ATTGAAGGTGACTTGGCTACTCTTGCCGACAAGAGTATCTTTCCTGGGGATGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagcaaatatgatgtgccaaataatttgtgaaagacaaatgatgttgttgatggttctaattgtttttcg---tttgtgtttcag
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ATTGAAGATGATTTTGCTACTCTTGCTGACAAGTGTATTTTTCCTGGAGATGTTCTATGGGTTAAAGATTCCGAAATCTACGAGAACCGTGACATAGCAGgtgaagcaacaattgtaatgtgctgaaca-tttctgaaa----aatgatattgttgatggttcatttttttctttgcccttgatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025740|gb|CO454489.1|CO454489
EST:     TGTTCTTTGGTTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAG                         ATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTNT
genomic: TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagc ... tgtgtttcagATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTT-T
EST: gi|60345273|gb|DN212246.1|DN212246
EST:     TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAG                         ATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA
genomic: TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagc ... tgtgtttcagATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA
EST: gi|211478836|gb|FL266343.1|FL266343
EST:     TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAG                         ATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA
genomic: TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagc ... tgtgtttcagATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA
EST: gi|76284352|gb|DV023920.1|DV023920
EST:     TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAG                         ATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA
genomic: TGTTCTTTGGGTCAGAGACTCTGAAATCTTTGAGAACCGTGACATAGCAGgtgcagtagc ... tgtgtttcagATGAGATTTCAGAGCAGAAGGGTGATATACTGCAGGTTGAGGAAGGCTTTA