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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatcttacacacatctagaagcatttccatacaacaggcatggtggtaactgtggttctagtgcacaaattagtatgttactatagatgcgatgg...

Basic information

species Zea mays
transcript GRMZM2G370852_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g03260.3 (Oryza sativa), 5'ss of exon 12
GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatcttacacacatctagaagcatttccatacaacaggcatggtggtaactgtggttctagtgcacaaatta---gtatgttactatagatgcgatgg
|||||| |||||||||||||||||||||||||| || |||| ||| || |||||| ||||||| ||||| ||||| ||||| || ||||||||||||| |||  ||  ||  || | || |   || |   |   | |    |  | ||   |||| |      |  | | || |||    | | || ||  | |    | | 
GATATTTGAGGAGGCTGGTTGTGATACACCAGCTAGCCCTAGTTGTGGTGCTTGTTTGGGTGGTCCTCGTGATACATATGCTCGCATGAATGAACCTATGgtaagtgcctc-caaatatttc--agtaaaacaggaaatgttgtttcgtatgaactttatcaacatagtagaatttatagatgtcttccttgaaagataaggt

upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA14G40570.1 (Glycine max), 5'ss of exon 14
GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatcttacacacatctagaagcatttccatacaacaggcatggtggtaactgtggttctagtgcacaaa-ttagtatgttactatagatgcgatgg
|||||| || || | ||| ||||| |||||||| ||||||| ||| || |||||| ||||||||||    ||||| || ||||| ||||||||||||| ||   ||  ||| |      |   |    ||   ||| | |  |  | ||   || | |  || |       |   ||| ||| ||     |  ||| |   
GATATTTGAAGAAGTTGGGTGTGACACACCAGCTAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCAAAAGATACTTACGCACGCATGAATGAACCTAAGgcaagttccttgcttctgccccaacatcttgtaatata-ctagtgtagttcaaattctacttgttacttttatccttattatattgaaggaattgcaaata

upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA17G37540.1 (Glycine max), 5'ss of exon 14
GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatcttacacacatctagaagcatttccatacaacaggcatggtggtaactgtggtt----ctagtgcacaaattagtatgttactatagatgcgatgg
|||||| || || ||||| ||||| |||||||| ||||||| |||||| |||||| ||||||||||    ||||| || ||||| ||||||||||||| ||   ||  ||| |      |        ||   ||| | |  |  | ||   || | |   |    ||  |   |  |||| ||| ||     |  ||| |   
GATATTTGAAGAAGCTGGGTGTGACACACCAGCTAGTCCTAGTTGCGGTGCTTGTTTGGGTGGCCCGAAAGATACTTACGCACGCATGAATGAACCTAAGgcaagttccttgcttcggcccctgcatcttgtaatata-ctagtgtagttcaaattctacctgttacttttatccttattattatattgaaggaattgcaa---

upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv05s0049g01980.t01 (Vitis vinifera), 5'ss of exon 14
GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatcttacacacatctagaagcatttccatacaacaggcatggtggtaactgtggttctagtgcacaaattagtatgttact-atagatgcgatgg----
|||||| ||||| ||||||||||||||||| ||||||||||  || || |||||| ||||||| ||| | || || |||||||| ||||||||||||  ||   | || ||     | ||| |   ||  |      || | ||||      |||| |    |   | |      |  |||    |  ||  |  |  |      
GATATTTGAGGAAGCTGGTTGTGATACACCTGCAAGTCCTACCTGTGGTGCTTGTATGGGTGGTCCTAGAGACACATATGCACGCATGAATGAACCTCAGgcaag-atattgttttcctcttggtacaacttt----aaaaagcatttcatcaactattccacctatacttctgcttttattcctcagatgaaacccctaactta

upper sequence: GRMZM2G370852_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv08s0056g01640.t01 (Vitis vinifera), 5'ss of exon 14
GATATTCGAGGAGGCTGGTTGTGATACACCAGCAAGTCCTAATTGCGGCGCTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggt--------atctta-cacacatctagaagcatttccatacaacaggcatggtggtaactgtggttctagtgcacaaattagtatgttactatagatgcgatgg
    || ||||| ||||||||||||||||| |||||||||| ||| || |||||| ||||||||||| | || || |||||||| ||||| ||||||  ||   ||        |||||   | || | || |||   ||  || ||||        ||   ||| | | | |  | ||| |   || |  | | |||||      || 
----TTTGAGGAAGCTGGTTGTGATACACCTGCAAGTCCTAGTTGTGGTGCTTGTTTGGGTGGCCCTAGAGACACATATGCACGCATGAACGAACCTCAGGCAAgttattattcatcttggtaaacctttaaaaggcattttat-caacta-ttccatgcccacttttgcttttattcaccaga-agaaaatca-tatagcctgtttg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149051576|gb|EE155676.2|EE155676
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|37375881|gb|CF624420.1|CF624420
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|76282892|gb|DV022460.1|DV022460
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|24765664|gb|CA400823.1|CA400823
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|211032048|gb|FL269121.1|FL269121
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|16927655|gb|BM080724.1|BM080724
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|71771493|gb|DR969430.1|DR969430
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGGACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|76924561|gb|DV170009.1|DV170009
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTTTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|101395254|gb|EB819557.1|EB819557
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|16916456|gb|BM072849.1|BM072849
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|110532595|gb|EE036775.1|EE036775
EST:     CTTGTCTGGGGGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|31350830|gb|CD435187.1|CD435187
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|60341015|gb|DN207988.1|DN207988
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|74238621|gb|DT646535.1|DT646535
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|78076215|gb|DV504649.1|DV504649
EST:     CTTGTTTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTTTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|211090106|gb|FL396339.1|FL396339
EST:     CYTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTC
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTC
EST: gi|71445105|gb|DR826155.1|DR826155
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|71763036|gb|DR960973.1|DR960973
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|211011802|gb|FL408548.1|FL408548
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|149080159|gb|EE169177.2|EE169177
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|211350370|gb|FL368852.1|FL368852
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAAACAG-AACTTCCCGGGCAGGATGGGGCACAA
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAA-CAGGAACTTCCCGGGCAGGATGGGGCACAA
EST: gi|148971978|gb|EE022780.2|EE022780
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|74246484|gb|DT654398.1|DT654398
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|149079940|gb|EE168953.2|EE168953
EST:     CTTGTTTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTTTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|37418663|gb|CF647003.1|CF647003
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
EST: gi|110195844|gb|EC877741.1|EC877741
EST:     CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACG                         GTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG
genomic: CTTGTCTGGGTGGCCCTCGCGATACGTATGCACGGATGAATGAACCTACGgtgggtatct ... ggatgtgcagGTCTGCGTGTCCACCACGAACAGGAACTTCCCGGGCAGGATGGGGCACAAG