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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaaaaggtatggtggattgctaatgcttaaattgtggtgaattatatag

Basic information

species Zea mays
transcript GRMZM2G353548_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 5'ss of exon 14
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattat-tcaataaaca----aaaaggtatggtggatt-gctaatgcttaaattgtggtgaattatatag-
 || |||||||| || ||||| ||||||||||| ||||||||||| || |||||||||||||||||||  || |||||||| |||||||||||||| |||||   ||||||||||  ||||| ||||    | ||  |||  | | || |||||| | |  | |      | ||  ||   
GGACATGGAGCTGGTAAGAGTTCTTCCTAGTGCTGAAGATGAAGTAAACGTTGCATGCTTTCATCCTTCCCCTGGAGGTGGTCTTGTTTATGGGACCAAGgtaaatagcaaattagatcaatcaacagtacacaacatatatttgctttgctaattcatgcactcacac-atttgcatcag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA19G35370.1 (Glycine max), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaa-aaggtatggtggattgctaatgcttaaattgtggtgaattatatag---------------------------
||||||||| ||||| || |||||||||||||| |||||||| |||||||| |||||||||||||||||  | ||||| || || |||||||| || |||||  |  |    ||  |    | || ||   ||||||||  |   ||   |||| |  |    | |||||| ||                            
AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCCGGAGGAGGACTAGTTTATGGAACAAAGgtatggtg----ttgctgggcagaccaatggggtatggtttagcactttagctttacattatttaaattatttaattgataatcttttgcatgtgattttag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA03G32620.2 (Glycine max), 5'ss of exon 11
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaa--taaacaaaaaggtatggtggattgctaatgcttaaattgtggtgaattatatag---------------------------
||||||||| ||||| || |||||||||||||| ||||| || |||||||| |||||||||||||||||  | || || || || |||||||| || |||||  || |    |    ||     | |||   ||||||||  |   ||   ||||| | | |  | |||||| ||                            
AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGgtatgttgttgctggggcagaccgaccaatggggtatggtttagcactttagcttacactatt-taaattatttaattgataatcttttgcatgtggttgtag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT5G43930.1 (Arabidopsis thaliana), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggt--------agcaaattatt--caataaacaaaaa--ggtatggtggattgctaatgcttaaattgtggtgaattatatag--------
||||||||||||||||||||| || || ||| | || |||||||| || ||||| || ||||||||||  || ||||| || |||||||||||||| |||||            | || || |||  | || |||||     ||| |||     || | ||  |  | |  ||    ||  | |          
AGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGAGGATGAAGTGAACGTTGCGTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGgtaaaccatattgaatcagatcattatcgattaacaatgttcggtttgggaatctgatcattatcgactcatgactcatgttttttttccgtag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagc---aaattattcaataaacaaaaaggta-tggtggattgctaa--tgcttaaattgtggtgaattatatag-----
||||||||| || |||||||| ||||| ||  | || |||||||| |||||||| |||||||||||||  || || || || ||||| ||||| || |||||   ||     ||||  |    | || ||         | |  | || | |  ||  |  ||  | |   | ||| ||      
AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgtaattaatcctaaatcgtaatgtgaaaaacttctcggcgctaaaatgttgacttgtattgatatttgctcaatatttatctcag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaaaaggtatggtggattgctaa-tgcttaaattgtggtgaattatatag------------------------------------------------------
||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| || ||||| ||||| || ||||||   | |  || |     |  | | |    |||  |   ||| |   | ||| |||      |||| ||||                                                        
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgat-accgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv05s0077g00140.t01 (Vitis vinifera), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtag-caaattattcaataaacaaaaaggtatggtggattgctaatgcttaaattgtggtgaattatatag--------------
 |||||||| ||||||||||| ||||||||||| || ||||| || ||||| || |||||||||||||     |||||||||||||| ||||| || ||||||   |   |   | |  |||  | |        ||||    |||   || |||  |     |  | |||  |               
TGATATGGAACTTGTGAGAGTTCTTCCTAGTGCAGAGGATGAGGTTAATGTAGCTTGCTTTCATCCTTCTGTTGGAGGTGGCCTTGTCTATGGAACGAAGgtgaacaaataggatttaaaatggatattgcttcttggttt-ctgcagctgtttacctgaccttataatattcacttgctcaaatacag

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: PP1S58_234V6.1 (Physcomitrella patens), 5'ss of exon 13
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaat---tattc--aataaacaaaaaggtatg---gtggattgctaatgcttaaattgtggtgaattatatag------------------
||||||||||||||||||||| ||||| ||||| || |||||||| ||||| || || ||||||||   |   || || || ||||| ||||| || |||||| || |    |   | |||   |  |  |   || |||    ||| ||   |  |  ||  ||  || |  |  ||                      
AGATATGGAGCTTGTGAGAGTACTTCCCAGTGCTGAGGATGAAGTGAATGTGGCGTGTTTTCATCCCCAAGTTGGTGGCGGTCTTGTATATGGAACAAAGgtgagttgttcttctgtgttctggactagtatttagatatatgtgtgaatcagttgtagttctatactgtttgaagattcgttatctgagataaagtgtt

upper sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
lower sequence: PP1S150_95V6.1 (Physcomitrella patens), 5'ss of exon 12
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaa-------attattcaa-taaacaaaaaggtatggtggattgctaatgcttaaattgtggtgaattatatag-------------------
|||||||||||||||||| ||  | |||||||| |||||||| || ||||| || |||||||||||   |   || ||||| ||||  ||||| || |||||| || |  |        || |||||   |  || ||| |||       |   | |       |  | ||  ||| ||| |                   
AGATATGGAGCTTGTGAGGGTATTACCTAGTGCTGAAGATGAGGTGAATGTGGCGTGCTTTCATCCCCAAGTTGGTGGTGGTCTTGCATATGGAACAAAGgtgagttgtgattcctctgtttttcaagccagtaataagttatcacattgtaggagtctccttttgttagtagatt-tattgtttaagctggaatattttg