Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGAGAAAGAAATTCTTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgcacgaaattatatttctatggaccaacagagttgcaaggctgttgatgttctaccttgcattgttgtaattattggcccatagttgttatac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 5'ss of exon 13
GTTGGAGAAAGAAATTCTTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgcac--gaaattatatttctatggac--caacagag----ttgcaaggctgttgatgttctaccttgcattgttgtaattattggcccatagttgttatac-------------------------------------------------------------------------
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ACTAGAGAAGGAAATGCTTGATCGCTATCTTGATGTGGTTCTGAAGGGAAACAAAGATGGACTGAAGgtaatatttttttgtggttattttgtagctgacaacagttgaaaatttcataagcttattgaaatcaaacacaaggaaattcccaagttttttttccagt-gcaacacattttcttattcaataatggatgttgtcttttcagtaaggaatgtgaccattttcacttctgtctatgtgcag
upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA16G05780.1 (Glycine max), 5'ss of exon 13
GTTGGAGAAAGAAATTCTTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgcacgaaattatatttctatggaccaacagagttgcaaggctgttgatgttctaccttgcattgttgtaattattggcccatagttgttatac----
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ATTGGAAAAAGAAATACTTGATCGTTATCTTGATGTTGTCCTGAAGGGTAACAGAGATGGATTGAAGgtaagctt--aggtttcttcttttcattttgcttctgcatgtgtatcctatttagcatgtggatt--attgaagacacatttattctgtaatttaagcttgctt
upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 5'ss of exon 13
GTTGGAGAAAGAAATTCTTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgcacgaaatt------atatttctatggaccaacagagttgcaaggctgttgatgttctaccttgcattgttgtaattattggcccatagttgttatac
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TCTGGAGAAAGAAATTCTAGATCGTTATCTTGAAGTAGTTTTGAAGGGGAACAAAGATGGGTTGAAGgtaaattccaaatactttgtgctatgctttgggaagataaataagtaaataggcatcagat-tcttgattttcgtcgtcttcat-atagtttaataatgaac----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211077208|gb|FK957144.1|FK957144EST: TTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAG ARATTACGACTGCGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTAT
genomic: TTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgca ... ttgtacacagAAATTACGGCTGAGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGAGAAAGAAATTCTTGACCGTTATCTTGATGTAGTTTTGAAGGGAAACAAAGATGGCCTAAAGgtaatatgcacgaaattatatttctatggaccaacagagttgcaaggctgttgatgttctaccttgcattgttgtaattattggcccatagttgttatac
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG