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GTTGAGGAGTTGGAGCAGGAAAAGCAGGAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttgtccattattttttatatcaattttttaatgcttaaaaggtatgccacttttaaaatggtttgtaattgtattgttgaactgtcctcacag...
species | Zea mays |
transcript | GRMZM2G341271_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAG GACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGAEST: gi|78084481|gb|DV512874.1|DV512874
genomic: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttg ... gtgcatctagGACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGA
EST: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAG GACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGAEST: gi|19822759|gb|BQ048783.1|BQ048783
genomic: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttg ... gtgcatctagGACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGA
EST: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAG GACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGAEST: gi|87152100|gb|DY396889.1|DY396889
genomic: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttg ... gtgcatctagGACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGA
EST: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAG GACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGA
genomic: GAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttg ... gtgcatctagGACAATTGCTGATATTGAAGAATCAGAAACCCGAGCTCGCAATCAGGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGGAGTTGGAGCAGGAAAAGCAGGAGCTGGAGTTTATTGCAGATATGTACGTGAAAGAAAGTTCTGAGTCTAGgtaaaacttgtccattattttttatatcaattttttaatgcttaaaaggtatgccacttttaaaatggtttgtaattgtattgttgaactgtcctcacag
- - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA