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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatcactgcaaatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag

Basic information

species Zea mays
transcript GRMZM2G308570_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA15G41040.1 (Glycine max), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatcactgcaaatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag
||||| |||||||||| || ||  | ||||| |||||||| |||||  | |||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||  || ||||| |   ||   ||  ||    | |   |    ||   |  || ||  |      | | | | |||||
ATGTGCACCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTTGCTCAAAATGCCCTTGCTCAAGTTGCGTGGAATTTTGTAAATGATGGgtatg--aagattacacaa-atttttgttaaggccagtggcctttgatttttctttcctgaaatgaggatgtgatatgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA07G35010.1 (Glycine max), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatc--------actgca----aatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag
||||  | ||||| || || ||  | || ||||| ||||| || ||| | |||||  | ||||| ||||| |||||||| ||||| ||||| ||||||||||||| |    || |  ||  |         ||| ||    | |  |  |    ||| ||   |  | || | || |  |||| ||  | |||
ATGTTCAACATCCGTATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCATGGAACTTTGTTAATGATGGgtatgatttggttgccatttgtttgaatttaacttcattgaatttattttttttaaatatatttgttcac-acac-tggaaagtggctttcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA08G17960.1 (Glycine max), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatcactgcaaatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag
||||| | |||||||| || ||  | ||||| |||||||| |||||  | || ||||||||||| || || |||||||| ||||||||||| |||||||||||||  || ||||| |    |   |  |        |   |    ||   |  || ||  |  |   | | | | |||||
ATGTGCATCATCCTTATAAACCTCTTGTTGAGGCAATAAAGAAATTCAAAGTAGCTCAAAATGCCCTAGCTCAAGTTGCGTGGAATTTTGTAAATGATGGgtatg--aagattacacaattttttttaaggcgagtgtggcctttgatttttctttcctgaaattaggatgtgatatgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA20G02860.1 (Glycine max), 5'ss of exon 5
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatc--------actgcaaatagtaatccacaaa-catgcctacttac-tataccttaaaaggggtgtgcag
||||  | ||||| || || ||  | || ||||| ||||| || ||| | |||||  | ||||| ||||| |||||||| ||||| ||||| ||||||||||||| |    || |  ||  |         ||||     | | ||    |||  ||   |  | ||  |      ||||| ||  | |||
ATGTTCAACATCCATATAAACCTCTTGTGGAAGCCATAAAGAAGTTTAATGTTGCGAAGAATGCCCTTGCACAAGTTGCGTGGAACTTTGTTAATGATGGgtatgatttggttgcaatttgtttgaatttaactgtgtcgatttatttttaaaatatatttgatcacacactggaaaaaagtggctttcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT5G45190.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgct--aaaattactcttcatcactgcaaatagtaatcc-acaaac---atgcctacttact-ataccttaaaagg-ggtgtgcag
||||  | |||||||| || ||| |||| ||||||||||| |||||| ||||||| || ||||||||||| |||||||| ||||||||||| ||||||||||| | |  | || || |       |  ||    | |||| | |    |    |   | | |  | ||||  | ||| | ||  |||||
ATGTTTATCATCCTTATAAACCCCTGGTAGAAGCAATAAAGAAATTTAAGGTTGCACAGAATGCACTTGCCCAAGTTGCATGGAATTTTGTTAATGATGGgtacgttcaagaactatttccttctaaagcttccaataattctatgtgccttgtattttcgtcttcatacaatgaaaagtggcttgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT4G19600.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatca----ctgcaaatag--taatccacaaacatgcctacttact-ataccttaaaaggg-gtgtgcag
||||  | |||||||| |||||  | || ||||| ||||| |||||| |||| || || ||||| || || |||||||| ||||||||||| || |||||||| | ||||| |    ||| |      || || ||||    |||        |   | |||  | ||||  | ||| |  |  |||||
ATGTTTATCATCCTTATAAGCCTCTTGTAGAAGCGATAAAGAAATTTAAGGTCGCACAGAATGCTCTGGCCCAAGTTGCATGGAATTTTGTTAACGATGGgtacgttaaaagtctgtttccttgaaagcttcagatagatctatctgtct-tgtattttcttcttcatacaatgaaaagatgcttgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv00s0125g00270.t01 (Vitis vinifera), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAAT---GCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatg-ctaaaattactcttcat---------------------cactgcaaatagtaa----tccacaaacatgcctacttact-atac-cttaaaaggggtgtgcag
   |||  ||     | ||   |   |  | |              | |||||||    |||   || ||||| |||||||| |||||||||||||||||||||||||  ||| ||   | |||||                     || | ||||| ||      ||| |       | |  | ||| | || ||  |||| ||  |||||
--TTGAGGCAATGAAA-AAATTCAAAGCCGCACAGGATGCTCTTGCTCAGGTTGCATGGAATTTTGCTCTTGCTCAAGTTGCATGGAATTTTGTCAATGATGGgtatgattaagatgctttttcatgtctctcttttttgatagttccatttcaaatggtctctcttcctctctttctcttcttcactcacacactggaaagcggcttgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: Vv19s0027g01670.t01 (Vitis vinifera), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaattactcttcatcactgcaaatagtaatccacaaacatgcctacttactataccttaaaaggggtgtgcag
||||| ||||||| || || ||| | || || |||||||| |||||  |||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |    || ||  |  |   |    |   || |   |   | | | |     ||  ||||   ||| ||  |||||
ATGTGCACCATCCATATAAACCCCTTGTAGAGGCAATAAAGAAATTCAAGGTTGCTCAAAATGCCCTTGCTCAAGTTGCTTGGAATTTTGTCAATGATGGgtatgatggg-ttgcttcttttttttatgcacgttattgttctttcttccttctcatcttgacctgggaagcggcatgcag

upper sequence: GRMZM2G308570_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ27727 (Selaginella moellendorffii), 5'ss of exon 4
ATGTGAACCATCCTTACAAGCCCTTGGTTGAAGCAATAAAAAAATTTGAGGTTGCTCAAAATGCACTTGCGCAAGTTGCCTGGAATTTTGTCAATGATGGgtatgctaaaat-tactcttcatcactgcaa-----atagtaatccacaaacatgcctacttactataccttaa---aaggggtgtgcag-------------------
| ||  ||||||| ||||  ||  |||| |  || |||||||| ||  | ||  ||||| |||| || || |||||||| ||||| ||||||||||||||||| |||       ||   |    ||| ||      |  | | |     |    |  |  || |   || || |    | |||  || ||                   
ACGTTCACCATCCATACAGACCGCTGGTGGCCGCCATAAAAAAGTTCAACGTCTCTCAACATGCGCTGGCTCAAGTTGCGTGGAACTTTGTCAATGATGGgtaagctctcgcacaccagtaggaacttcagtctcgactggagtgttggagtccgtgttgtttcatcactttgatgagatgggaatgaagcagtggaagggatgtgcag