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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTGgtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttttttctatcag

Basic information

species Zea mays
transcript GRMZM2G300412_T01
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 7
GATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTGgtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttttttctatcag
|||||||||||| || |||||||||||||| |||||||| |||||||| |||||||  |||||||||||||| |||||||| || |||||||  | ||||| | | | |  |  | |  ||||    |   ||||| |||  ||  |   |||||| |||||   || | || | ||  ||   |||||
GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgttc-tatcacaaatacactacatttatcctatattttcttaatctag-tgcaaagttcacttac---ttgaattgatttacttc--atcag

upper sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTGgtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttt-----tttctatcag
||| ||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||| ||||  ||| ||||| |||||||| || || ||||  ||||    | | |   ||    |   |||| |||   |||  | |||  |      ||        | ||    |    |   |      | |||||   
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgta--tttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat---

upper sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 13
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTGgtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttttttctatcag
|||| |  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| ||||| || ||||     || || | || |||||    || | | |  ||  |  ||||    |  |   ||                                      
GATTCTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttg--tcttgtctac--tgcctgctcattg--tgccgagcag-------------------------------------

upper sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 13
lower sequence: EFJ35029 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTGACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAATTGAGGCCTACTGGGGCAATGTTAATCCGATTGgtaaatttgttcatctgaaatttgaaatttatttgctttggtttttcataaattatctttcaagttctcttacagttttatttaactttttttctatcag
||||||  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| ||||| || ||||     || || | || |||||    || | | |  ||  |  ||||    | ||   ||                                      
GATTTTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttg--tcttgtctac--tgcctgctcattg--tgtcaagcag-------------------------------------