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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatactatgagtccatgttatttttgataagggagtccatagtctttgctacccttcagacatgatgtgcaagatgaattgacatctgctgttttctctttcag

Basic information

species Zea mays
transcript GRMZM2G181151_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 13
AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatactatgagtccatgttatttttgataagggagtccatagtctttgctacccttcagacatgatgtgcaagatgaattgacatctgctgttttctctttcag
||||||||||||||||| ||||| ||| |||||||||| ||||||||||| |||||| | | |  || |||||   |  ||||||       | |||    |  ||||      | || |   |||      ||  | |  | ||||||||  | || |||
AGTGCTATTGGTGAGGGTATGACCCGTCGAGACCATTCAGATGTGTCTAACCAGgtaaacatttggactccat---acatttgat-------ttcat---ttaagctatggcaaatacttacagtg------gagctcatttatgctgtttcatgttacag

upper sequence: GRMZM2G181151_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 13
AGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatactatgagtccatgttatttttgataagggagtccatagtctttgctacccttcagacatgatgtgcaagatgaattgacatctgctg--ttttctctttcag
||||| ||||||||||| ||||| ||| |||||||| | |||||||| || ||||||      |  || |              |||| | ||   || | ||  | |   |   |   | | |         ||  |||  ||| ||  ||||| | |||||
AGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAACCAGgtaagattcagaaggct-------------taagtgtgtttttaattttctccattatattgctttaaggcctc---ctaaccgac-cctgttgatttttcaccttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355003|gb|DN221976.1|DN221976
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|16925493|gb|BM078561.1|BM078561
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|4646659|gb|AI491497.2|AI491497
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|32945219|gb|CF050038.1|CF050038
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211017023|gb|FL053488.1|FL053488
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|60343435|gb|DN210408.1|DN210408
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211222466|gb|FL437622.1|FL437622
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATT-GAAAGGGATGTTCAGGCCATGAAGGCAGT
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAA-GGATGTTCAGGCCATGAAGGCAGT
EST: gi|60352479|gb|DN219452.1|DN219452
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|31664289|gb|CD573014.1|CD573014
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|6973468|gb|AW438162.1|AW438162
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211122809|gb|FL454319.1|FL454319
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|67019767|gb|CO448516.1|CO448516
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|33101769|gb|CF061729.1|CF061729
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|194716931|gb|FK934090.1|FK934090
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCTTGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211222467|gb|FL437623.1|FL437623
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|60394888|gb|DN227757.1|DN227757
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|67015926|gb|CO444675.1|CO444675
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCANGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|33101431|gb|CF061391.1|CF061391
EST:     CTATTGGTGAGGGCATGACGCGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAA-GGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|87155501|gb|DY400290.1|DY400290
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|30307203|gb|CD001876.1|CD001876
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|213188201|gb|FM181912.1|FM181912
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|60399031|gb|DN231847.1|DN231847
EST:     CTATGGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|60395817|gb|DN228687.1|DN228687
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|24767815|gb|CA402951.1|CA402951
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCAGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211309921|gb|FL436450.1|FL436450
EST:     ATTGGGGAGGGCATGACACGTAGAGGACCATTCGGATGGT-TCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: ATTGGTGAGGGCATGACACGTAGA-GACCATTCGGAT-GTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|6563648|gb|AW231375.1|AW231375
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|4646712|gb|AI491575.2|AI491575
EST:     CTATTGGTGAGGGCATGGCACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|13236999|gb|BG355013.1|BG355013
EST:     CTATTGGTGAGGGCATGACACGTAGAGGCCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|6539106|gb|AW225245.1|AW225245
EST:     GAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: GAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|32944615|gb|CF049434.1|CF049434
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGT
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGT
EST: gi|60396754|gb|DN229618.1|DN229618
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|37401251|gb|CF637988.1|CF637988
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211019798|gb|FL053491.1|FL053491
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|33094143|gb|CF054137.1|CF054137
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211107575|gb|FL066804.1|FL066804
EST:     ACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: ACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|32933748|gb|CF038560.1|CF038560
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|32942169|gb|CF046988.1|CF046988
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|32931582|gb|CF036394.1|CF036394
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
EST: gi|211222468|gb|FL437624.1|FL437624
EST:     CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG                         CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC
genomic: CTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAGgtacatacta ... tctctttcagCTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTC