Sequence
atgc intronic sequence ATGC exonic sequenceATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatatttatcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G180418_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g55630.1 (Oryza sativa), 5'ss of exon 8
ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatatttatcaattcataaaatgaataccgagac---ataccacaattcttttg-tagtgttg-ggata-tggagttagttatattgacggcaatttgaaatacact--catgcag------
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ACCATCATGCACACGATCACACCCATGATCCTGGTGTTTCTTCTGTAAGCATTGTTTGTGAAGGGGAGATGGATCTTGAAAAGgttggttctaaatttatctgtcatgctctattttctcatcatcgctaaatgaaatttagaatccaaatactatcacccttttaattgccctgcacataatggggttgtggatattgaaacaagcggataacaatcttacatgcacccacag
upper sequence: GRMZM2G180418_T01 (Zea mays), 5'ss of exon 13
lower sequence: AT1G80480.1 (Arabidopsis thaliana), 5'ss of exon 8
------ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgct--atatgcctatatttatcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
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ATCATCATCATCATTCTCATGATCACACCCATGATCCCGGTGTTTCTTCAGTCAGTATAGTTTGCGAAGGAAGCTTAGACCTTGAGAAGgtaatatagataatatgcagcttgagaggcacacaaaagtctcat-ataaaacgactgtttgatgaaaccgtatgttaatcttcaaattgtgtcac--aatccatcag-------------------------------
upper sequence: GRMZM2G180418_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0002g08230.t01 (Vitis vinifera), 5'ss of exon 3
---------ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatattta--tcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
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AACACAATGATCACCATTCCTATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggtgttagtgttt-ttacaggcggtttatatgcaagtttcttcataac-tgcatctagaattatattccaatttttttatatccttg--acctgacctatg-----------------------------------
upper sequence: GRMZM2G180418_T01 (Zea mays), 5'ss of exon 13
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 8
---------ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatatttatcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
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AGCACAATGATCACCATTCCCATGATCACACTCATGACCCAGGTGTTTCTTCAGTCAGCATAGTTTGTGAAGGGAGCTTGGACCTTGAGAAGgttggttttagtgttt-ttgcaggcagtttatatgcaagttcttcataactgcgtctaaaattatggtccaaattttttatatccttg--acctgacctatgt----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|94477085|gb|EB706043.1|EB706043EST: GAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAG GCTGACATGTGGTTGGGGAACCTACTGCTGGAACACAGCGAGGATATATAC
genomic: GAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcc ... actcatgcagGCTGACATGTGGTTGGGGAACCTACTGCTGGAACACAGCGAGGATATATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATCATGCACATGACCACACTCATGATCCTGGTGTTTCTTCTGTGAGCATTGTTTGCGAAGGGGAGATGGATCTTGAAAAGgccagtctcctcatctcttgctatatgcctatatttatcaattcataaaatgaataccgagacataccacaattcttttgtagtgttgggatatggagttagttatattgacggcaatttgaaatacactcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA