Sequence
atgc intronic sequence ATGC exonic sequenceTGGGGCATTTTCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 13
TGGGGCATTTTCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacag
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TGGAGCATTCTCTGTATTGAAGGAGCTTGTTGTTGTACTGCCAGACTGTCTTGCTGATCATATTGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttgg---------tgattcccattttgcttaaaatattatgtgcaggacttcta---cttgttgctaacttgttttctt--tttcatag---------
upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 13
lower sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 13
TGGGGCATTTTCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacag
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TGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTACCCAACTGTCTTGCAGATCACATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTGAATgt-aggcatgattgttttgaattataattttgtttaaactcatctagtttcccagta-ccgattgctttgtcttttctttg--cttgtcag--------
upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 13
lower sequence: AT2G02560.1 (Arabidopsis thaliana), 5'ss of exon 13
TGGGGCATTTTCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacag
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TGGAGCATTCTCTGTTTTGAGAGAACTTGTGGTTGTCCTGCCTGACTGTCTTGCTGATCATATTGGTTCACTTGTTCCTGGAATTGAAAGGGCGCTAAATgttagtggatatattcattacacttatttatggactgtcactgtcagtg-ttgctctttttcaagtgctcatgttttctctatttt-ttacttctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32859371|gb|CD999052.1|CD999052EST: ATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAAT GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGG
genomic: ATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtg ... gatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGGGCATTTTCAGTACTGAAGGAGCTTGTGGTTGTATTACCAGACTGTCTTGCTGATCATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT