1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGATGAAGAATTGCCCAAAGTTTGGAAAAGTTATACTGGTTGCCATGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttacattatcttttatgtgtttttagctcctatatttccaaacaataatactgttggtggaaacaaaaaaaacttgccaagcccaggagtcaga...
species | Zea mays |
transcript | GRMZM2G168249_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|32907039|gb|CF011852.1|CF011852
genomic: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: GTGGACTGGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|5901140|gb|AW042240.1|AW042240
genomic: GTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|32908909|gb|CF013722.1|CF013722
genomic: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: GTGGACTGGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|15100644|gb|BI396435.1|BI396435
genomic: GTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: ATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|111190712|gb|EE288848.1|EE288848
genomic: ATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTEST: gi|211167255|gb|FL462156.1|FL462156
genomic: TGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
EST: TCATGAGCTGTACAAAAGT-GACTAGGTGAAATAATGTTTGATAAG TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
genomic: TCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttac ... ttttctgtagTTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGATGAAGAATTGCCCAAAGTTTGGAAAAGTTATACTGGTTGCCATGGTTCATGAGCTGTACAAAAGTGGACTAGGTGAAATAATGTTTGATAAGgtgagcttacattatcttttatgtgtttttagctcctatatttccaaacaataatactgttggtggaaacaaaaaaaacttgccaagcccaggagtcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA