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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCTGGAACTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttatctgagtcaagcttgaacatgcctaataatttatttagccagaaagcctaactctgtttctaattataaacag

Basic information

species Zea mays
transcript GRMZM2G164265_T02
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164265_T02 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 5'ss of exon 13
TTGTGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCTGGAACTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttatctgagtcaagcttgaaca-----tgccta-ataatttatttagccagaaagcctaactctgtttctaattataaacag
||||||||| || || ||||| |||||||| ||||| ||||| || ||||||||||||  |||||||||| | |||||||||||||||||||| || |||||| |||    |  ||  || |   | |     | | |  || |||| ||| ||    |  |||||||||||||| ||||||| | ||
TTGTGTGGCGTCTTCAGCAAATCTTTGGGCCCTCATAATGGATGCAGGAACTGGTTTCCTTTCTCAAGTTCATGAGCTCTCACCAGTTTTTCTGCATAAGgtaaagtacaatctgttgaggtgtgataattagtacttggattatttgttt-gctgagagtcctaactctgtttc-aattatacatag

upper sequence: GRMZM2G164265_T02 (Zea mays), 5'ss of exon 13
lower sequence: AT3G03940.1 (Arabidopsis thaliana), 5'ss of exon 13
TTGTGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCTGGAACTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttatctgag--tcaagcttga---acatgcctaataatttatttagccagaaagcctaac--tctgtttcta-attataaacag
 ||||| || || || || || || |||||  |||||||||| ||||| ||||||||| ||||||||||||| || || ||  |||| || || ||||||||| |        ||  | | | |  |   |  || |  |    || | |  |   |    || ||  | |||||||  ||| |   |||
CTGTGTAGCATCATCAGCTAATCTCTGGGCCATCATCATGGATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGgtaaaacagctgaagcattaggatccatctatctgtcatacctattctctgactgtagcagctcaccatttgtttctggattctttgcag

upper sequence: GRMZM2G164265_T02 (Zea mays), 5'ss of exon 13
lower sequence: EFJ19085 (Selaginella moellendorffii), 5'ss of exon 9
TTGTGTGGCTTCCTCGGCAAACCTTTGGGCACTCATCATGGACGCTGGAACTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttatctgagtcaagcttgaacatgcctaataatttatttagccagaaagcctaactctgtttctaattataaacag
  | || || || ||| | ||||| ||||| || || |||||||| |||||||| ||| |||| ||||| |||||||| || | ||| ||| ||||||||||||   | |    |  |   ||   |  | ||  | |  | | |   | |   | | ||                      
CAGCGTTGCCTCTTCGACGAACCTCTGGGCGCTGATAATGGACGCCGGAACTGGATTCGGTTCGCAAGTCTACGAGCTATCGCAAGTGTTTTTCCACAAGgtactacttttgacgaaacaatttttcgaggcttctcacatttctctgctgcctgtcaaag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5915380|gb|AW053021.1|AW053021
EST:     CTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|149102515|gb|EE287878.2|EE287878
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|149097990|gb|EE183935.2|EE183935
EST:     CAAGTTNACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|148974692|gb|EE025499.2|EE025499
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|71430774|gb|DR811824.1|DR811824
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|149031683|gb|EE154868.2|EE154868
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|78113586|gb|DV531977.1|DV531977
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|149098314|gb|EE184284.2|EE184284
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|148937186|gb|EC881367.2|EC881367
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|71300241|gb|DR786191.1|DR786191
EST:     CTGGTTTTTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|148999277|gb|EE036205.2|EE036205
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|148950556|gb|EC896133.2|EC896133
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|71764976|gb|DR962913.1|DR962913
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|32913238|gb|CF018050.1|CF018050
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGT
EST: gi|32855731|gb|CD995412.1|CD995412
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|5555573|gb|AI881524.1|AI881524
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|71300237|gb|DR786190.1|DR786190
EST:     CTGGTTTTTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|33093570|gb|CF053564.1|CF053564
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|67043197|gb|CO469452.1|CO469452
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         -ACTGGATA-TGGAGCAGTGGGAGAAAAGT-ACTA
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTA
EST: gi|148950415|gb|EC895982.2|EC895982
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|33093597|gb|CF053591.1|CF053591
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
EST: gi|148939598|gb|EC884226.2|EC884226
EST:     CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAG                         GACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT
genomic: CTGGTTTCTGTTCTCAAGTTTACGAGCTCTCACCAGTTTTTCTCCACAAGgtacagttat ... ttataaacagGACTGGATAATGGAGCAGTGGGAGAAAAGTTACTACATAACAGCAATTGCT