1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCAAGGAGGTCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGATgtaaaatacatatattgttcttctgtcttgaaatctatatgggagaaatgttatgactaattattcatgtgttcccaccgtgctag
species | Zea mays |
transcript | GRMZM2G161168_T01 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTGCCAGTGAT GATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAAEST: gi|71426967|gb|DR808017.1|DR808017
genomic: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGATgtaaaataca ... accgtgctagGATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAA
EST: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGAT GATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAAEST: gi|40334664|gb|CK368734.1|CK368734
genomic: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGATgtaaaataca ... accgtgctagGATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAA
EST: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGAT GATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAA
genomic: TCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGATgtaaaataca ... accgtgctagGATCTTGACTTGCAATGCGAGGAGTTAATCCAGGAAGAGTTTGGCTTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGGAGGTCATAATTGCCTACTACATTTTGATGGAGAATGGAAAGGCTACCAGTGATgtaaaatacatatattgttcttctgtcttgaaatctatatgggagaaatgttatgactaattattcatgtgttcccaccgtgctag
- - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - GGAGAA